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Recent Releases of datastew

datastew - v0.6.0

What's Changed

  • chore(deps): bump the all-dependencies group with 2 updates by @dependabot[bot] in https://github.com/SCAI-BIO/datastew/pull/127
  • chore(deps): bump the all-dependencies group with 2 updates by @dependabot[bot] in https://github.com/SCAI-BIO/datastew/pull/128
  • chore(deps): bump the all-dependencies group with 3 updates by @dependabot[bot] in https://github.com/SCAI-BIO/datastew/pull/130
  • Feat postgresql db by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/129
  • chore(deps): bump the all-dependencies group with 3 updates by @dependabot[bot] in https://github.com/SCAI-BIO/datastew/pull/132
  • feat: JSONL import/export functionality for SQL adapters by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/133
  • chore(deps): bump the all-dependencies group across 1 directory with 4 updates by @dependabot[bot] in https://github.com/SCAI-BIO/datastew/pull/139
  • chore(deps): bump scikit-learn from 1.7.0 to 1.7.1 in the all-dependencies group by @dependabot[bot] in https://github.com/SCAI-BIO/datastew/pull/140
  • chore: remove legacy functions and modules by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/136

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.8...v0.6.0

- Python
Published by mehmetcanay 7 months ago

datastew - v0.5.8

What's Changed

  • test: test for identical query by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/120
  • chore(deps): bump the all-dependencies group across 1 directory with 3 updates by @dependabot in https://github.com/SCAI-BIO/datastew/pull/122
  • chore: add codeql actions script by @tiadams in https://github.com/SCAI-BIO/datastew/pull/115
  • chore(deps): bump the all-dependencies group across 1 directory with 5 updates by @dependabot in https://github.com/SCAI-BIO/datastew/pull/124
  • fix: objects escaping duplicate check by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/125

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.7...v0.5.8

- Python
Published by mehmetcanay 9 months ago

datastew - v0.5.7

What's Changed

  • chore(deps): bump the all-dependencies group with 3 updates by @dependabot in https://github.com/SCAI-BIO/datastew/pull/113
  • Update README.md by @tiadams in https://github.com/SCAI-BIO/datastew/pull/116
  • fix: handle null descriptions in OLS import task by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/118

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.6...v0.5.7

- Python
Published by mehmetcanay 10 months ago

datastew - v0.5.6

What's Changed

  • Fix t-SNE by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/114

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.5...v0.5.6

- Python
Published by mehmetcanay 10 months ago

datastew - v0.5.5

What's Changed

  • feat: enable JSONL import generation from OHDSI without vector embeddings by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/104
  • chore(deps): bump the all-dependencies group across 1 directory with 4 updates by @dependabot in https://github.com/SCAI-BIO/datastew/pull/103
  • refactor: align SQLite and Base repository with Weaviate by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/106
  • refactor: enable OLS vectorizer support by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/108
  • chore(deps): bump the all-dependencies group with 2 updates by @dependabot in https://github.com/SCAI-BIO/datastew/pull/109
  • fix: check if description is a list or string by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/110
  • Update tests.yml by @tiadams in https://github.com/SCAI-BIO/datastew/pull/112

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.4...v0.5.5

- Python
Published by mehmetcanay 10 months ago

datastew - v0.5.4

What's Changed

  • feat: Ollama adapter by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/102

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.3...v0.5.4

- Python
Published by mehmetcanay 11 months ago

datastew - v0.5.3

What's Changed

  • refactor: define schemas as classes by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/99
  • refactor: wrap embedding model adapter classes in Vectorizer class by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/100

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.2...v0.5.3

- Python
Published by mehmetcanay 11 months ago

datastew - v0.5.2

What's Changed

  • refactor: import from JSONL instead of JSON by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/97

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.1...v0.5.2

- Python
Published by mehmetcanay 12 months ago

datastew - v0.5.1

What's Changed

  • perf: load and process JSON data in chunks by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/96

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.5.0...v0.5.1

- Python
Published by mehmetcanay 12 months ago

datastew - v0.5.0

What's Changed

  • chore(deps): bump jinja2 from 3.1.4 to 3.1.5 by @dependabot in https://github.com/SCAI-BIO/datastew/pull/68
  • Add adapters for import/export by @tiadams in https://github.com/SCAI-BIO/datastew/pull/66
  • feat: adapt documentation scripts & refactor by @tiadams in https://github.com/SCAI-BIO/datastew/pull/71
  • Update README.md by @tiadams in https://github.com/SCAI-BIO/datastew/pull/76
  • doc: Remove python 3.9 classifier by @tiadams in https://github.com/SCAI-BIO/datastew/pull/77
  • feat: OHDSI to JSON schema conversion by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/74
  • Feature string caching by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/72
  • chore(deps): bump transformers from 4.47.1 to 4.48.0 by @dependabot in https://github.com/SCAI-BIO/datastew/pull/81
  • Create dependabot.yml by @tiadams in https://github.com/SCAI-BIO/datastew/pull/83
  • chore(deps): bump aiofiles from 0.7.0 to 24.1.0 by @dependabot in https://github.com/SCAI-BIO/datastew/pull/84
  • Update dependabot.yml by @tiadams in https://github.com/SCAI-BIO/datastew/pull/89
  • chore(deps): bump cachetools from 5.5.1 to 5.5.2 by @dependabot in https://github.com/SCAI-BIO/datastew/pull/85
  • chore(deps): bump scikit-learn from 1.6.0 to 1.6.1 by @dependabot in https://github.com/SCAI-BIO/datastew/pull/86
  • chore(deps): bump matplotlib from 3.10.0 to 3.10.1 by @dependabot in https://github.com/SCAI-BIO/datastew/pull/88
  • chore(deps): bump the all-dependencies group across 1 directory with 11 updates by @dependabot in https://github.com/SCAI-BIO/datastew/pull/93
  • Feat huggingface vectorizer init by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/80

New Contributors

  • @dependabot made their first contribution in https://github.com/SCAI-BIO/datastew/pull/68

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.4.2...v0.5.0

- Python
Published by tiadams 12 months ago

datastew - v0.4.2

What's Changed

  • Update workflows and packaging to poetry by @tiadams in https://github.com/SCAI-BIO/datastew/pull/14
  • Update pyproject.toml by @tiadams in https://github.com/SCAI-BIO/datastew/pull/64
  • Drop python 3.9 support by @tiadams in https://github.com/SCAI-BIO/datastew/pull/65
  • feat: adapter parallel processing by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/63

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.4.1...v0.4.2

- Python
Published by tiadams about 1 year ago

datastew - v0.4.3

What's Changed

  • Drop python 3.9 support by @tiadams in https://github.com/SCAI-BIO/datastew/pull/65

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.4.2...v0.4.3

- Python
Published by tiadams about 1 year ago

datastew - v0.4.2

What's Changed

  • Update workflows and packaging to poetry by @tiadams in https://github.com/SCAI-BIO/datastew/pull/14
  • Update pyproject.toml by @tiadams in https://github.com/SCAI-BIO/datastew/pull/64

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.4.1...v0.4.2

- Python
Published by tiadams about 1 year ago

datastew - v0.4.1

What's Changed

  • Migrate to Weaviate v4 API by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/44
  • Add DataDictionarySource import by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/45
  • ci: bump action versions by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/47
  • Add version attribute by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/49
  • Fix Weaviate Database Client Restart Error by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/50
  • Extend README with t-SNE visualization by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/51

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.4.0...v0.4.1

- Python
Published by tiadams over 1 year ago

datastew - v0.4.0

What's Changed

  • Add a WeaviateRepository Function by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/18
  • fix: unclosed XLSX file error by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/28
  • Add terminology param to t-SNE by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/30
  • test: weaviate tests by @tiadams in https://github.com/SCAI-BIO/datastew/pull/31
  • Add function to directly retrieve embedding from data dictionary by @tiadams in https://github.com/SCAI-BIO/datastew/pull/35
  • Visualize vector embeddings for data dictionaries by @tiadams in https://github.com/SCAI-BIO/datastew/pull/39

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.3.5...v0.4.0

- Python
Published by tiadams over 1 year ago

datastew - v0.3.5

What's Changed

  • refactor: add functions to retrieve concept and terminology by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/17

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.3.4...v0.3.5

- Python
Published by tiadams over 1 year ago

datastew - v0.3.4

What's Changed

  • Add AD/PD evaluation script by @tiadams in https://github.com/SCAI-BIO/datastew/pull/13
  • Extend repository schema to include sentence embedder by @mehmetcanay in https://github.com/SCAI-BIO/datastew/pull/15

New Contributors

  • @mehmetcanay made their first contribution in https://github.com/SCAI-BIO/datastew/pull/15

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.3.3...v0.3.4

- Python
Published by tiadams over 1 year ago

datastew - v0.3.3

What's Changed

  • Add function to additionally retrieve similarities together with clos… by @tiadams in https://github.com/SCAI-BIO/datastew/pull/11

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.3.2...v0.3.3

- Python
Published by tiadams over 1 year ago

datastew - v0.3.2

What's Changed

  • Add failsafe for duplicate entries and DB restarts by @tiadams in https://github.com/SCAI-BIO/datastew/pull/10

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.3.1...v0.3.2

- Python
Published by tiadams over 1 year ago

datastew - v0.3.1

What's Changed

  • Add WeaviateRepository to package init by @tiadams in https://github.com/SCAI-BIO/datastew/pull/8
  • Resolve circular imports by @tiadams in https://github.com/SCAI-BIO/datastew/pull/9

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.3.0...v0.3.1

- Python
Published by tiadams over 1 year ago

datastew - v0.3.0

What's Changed

  • Angular workshop changes by @tiadams in https://github.com/SCAI-BIO/datastew/pull/5
  • Weaviate by @tiadams in https://github.com/SCAI-BIO/datastew/pull/6

New Contributors

  • @tiadams made their first contribution in https://github.com/SCAI-BIO/datastew/pull/5

Full Changelog: https://github.com/SCAI-BIO/datastew/compare/v0.2.0...v0.3.0

- Python
Published by tiadams over 1 year ago

datastew - v0.2.0

Full Changelog: https://github.com/SCAI-BIO/datastew/commits/v0.2.0

- Python
Published by tiadams over 1 year ago