protocolhelper

Helper functions and templates to manage the INBO/protocols repository.

https://github.com/inbo/protocolhelper

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 3 DOI reference(s) in README
  • Academic publication links
    Links to: zenodo.org
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (13.8%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Helper functions and templates to manage the INBO/protocols repository.

Basic Info
Statistics
  • Stars: 5
  • Watchers: 4
  • Forks: 0
  • Open Issues: 6
  • Releases: 24
Created almost 6 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation Support Zenodo

README.Rmd

---
output: github_document
---



[![Project Status: The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
![GitHub](https://img.shields.io/github/license/inbo/protocolhelper)
[![R build status](https://github.com/inbo/protocolhelper/workflows/check%20package%20on%20main/badge.svg)](https://github.com/inbo/protocolhelper/actions)
[![codecov](https://codecov.io/gh/inbo/protocolhelper/branch/main/graph/badge.svg?token=6W8WRNAZPA)](https://app.codecov.io/gh/inbo/protocolhelper)
![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/inbo/protocolhelper.svg)
![GitHub repo size](https://img.shields.io/github/repo-size/inbo/protocolhelper.svg)

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7181250.svg)](https://doi.org/10.5281/zenodo.7181250)


```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# protocolhelper

The goal of protocolhelper is to provide helper functions and templates to manage the [INBO/protocolsource](https://github.com/inbo/protocolsource) repository.

## Installation

You can install protocolhelper with:

``` r
# Enable inbo r-universe
options(repos = c(
    inbo = 'https://inbo.r-universe.dev',
    CRAN = 'https://cloud.r-project.org'))

# Install the package
install.packages('protocolhelper')

# alternatively: install from github
if (!requireNamespace("remotes")) install.packages("remotes")
remotes::install_github("inbo/protocolhelper")
```

Owner

  • Name: Research Institute for Nature and Forest (INBO)
  • Login: inbo
  • Kind: organization
  • Location: Belgium

Open source, data and science initiatives of the Research Institute for Nature and Forest (INBO)

Citation (CITATION.cff)

cff-version: 1.2.0
message: If you use this software, please cite it using these metadata.
title: "protocolhelper: Helper Functions to Manage Protocols"
authors:
- given-names: Hans
  family-names: Van Calster
  affiliation: Research Institute for Nature and Forest (INBO)
  orcid: 0000-0001-8595-8426
- given-names: Thierry
  family-names: Onkelinx
  affiliation: Research Institute for Nature and Forest (INBO)
  orcid: 0000-0001-8804-4216
- given-names: Floris
  family-names: Vanderhaeghe
  affiliation: Research Institute for Nature and Forest (INBO)
  orcid: 0000-0002-6378-6229
keywords:
- protocols
- R package
- Reproducible research
- Rmarkdown templates
contact:
- given-names: Hans
  family-names: Van Calster
  affiliation: Research Institute for Nature and Forest (INBO)
  orcid: 0000-0001-8595-8426
doi: ~
license: GPL-3.0
repository-code: https://github.com/inbo/protocolhelper/
type: software
abstract: "Helper functions to manage INBO protocols."
identifiers:
- type: url
  value: https://inbo.github.io/protocolhelper/
version: 0.8.1

GitHub Events

Total
  • Create event: 5
  • Release event: 3
  • Issues event: 8
  • Watch event: 1
  • Delete event: 3
  • Issue comment event: 15
  • Push event: 27
  • Pull request event: 5
  • Pull request review event: 17
  • Pull request review comment event: 14
Last Year
  • Create event: 5
  • Release event: 3
  • Issues event: 8
  • Watch event: 1
  • Delete event: 3
  • Issue comment event: 15
  • Push event: 27
  • Pull request event: 5
  • Pull request review event: 17
  • Pull request review comment event: 14

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 65
  • Total pull requests: 61
  • Average time to close issues: 5 months
  • Average time to close pull requests: 20 days
  • Total issue authors: 8
  • Total pull request authors: 4
  • Average comments per issue: 2.23
  • Average comments per pull request: 3.89
  • Merged pull requests: 59
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 3
  • Average time to close issues: 4 months
  • Average time to close pull requests: about 21 hours
  • Issue authors: 2
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • hansvancalster (34)
  • ElsLommelen (9)
  • florisvdh (7)
  • ThierryO (6)
  • ToonHub (5)
  • Eveltjen00 (4)
  • joost-vanoverbeke (1)
  • ToonVanDaele (1)
Pull Request Authors
  • hansvancalster (48)
  • ElsLommelen (7)
  • florisvdh (7)
  • ThierryO (3)
Top Labels
Issue Labels
enhancement (5) good first issue (1)
Pull Request Labels

Dependencies

.github/workflows/check_on_branch.yml actions
  • inbo/actions/check_pkg main composite
.github/workflows/check_on_different_r_os.yml actions
  • actions/cache v1 composite
  • actions/checkout v3 composite
  • actions/upload-artifact master composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-tinytex v2 composite
.github/workflows/check_on_main.yml actions
  • inbo/actions/check_pkg main composite
.github/workflows/release.yml actions
  • actions/checkout v2 composite
  • actions/create-release v1 composite
.github/workflows/remove_old_artifacts.yml actions
  • c-hive/gha-remove-artifacts v1 composite
DESCRIPTION cran
  • R >= 3.6 depends
  • R6 * imports
  • assertthat * imports
  • bookdown * imports
  • checklist >= 0.2.4 imports
  • commonmark * imports
  • fs * imports
  • gert * imports
  • jsonlite * imports
  • knitr * imports
  • purrr * imports
  • reactable * imports
  • rmarkdown * imports
  • rprojroot * imports
  • slickR * imports
  • stringr * imports
  • xfun * imports
  • xml2 * imports
  • yaml * imports
  • ymlthis * imports
  • dplyr * suggests
  • lubridate * suggests
  • magick * suggests
  • pander * suggests
  • png * suggests
  • testthat >= 2.1.0 suggests