physicell_sdf_test

Physicell repo to experiment signed distance functions

https://github.com/dsshakeelahamed/physicell_sdf_test

Science Score: 18.0%

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CITATION.cff file
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codemeta.json file
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Low similarity (1.9%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

Physicell repo to experiment signed distance functions

Basic Info

Host: GitHub
Owner: dsshakeelahamed
Language: C++
Default Branch: master
Size: 6.17 MB

Statistics

Stars: 0
Watchers: 1
Forks: 1
Open Issues: 0
Releases: 0

Created about 4 years ago · Last pushed almost 4 years ago

Metadata Files

Readme Changelog License Citation

README.md

PhysiCell-Test

If you have verified that PhysiCell works on your system (see tutorials at https://github.com/PhysiCell-Training/ws2021), you should be able to compile this project with "make".

Owner

Login: dsshakeelahamed
Kind: user

Repositories: 5
Profile: https://github.com/dsshakeelahamed

Citation (CITATION.txt)

If you use PhysiCell in your project, please cite PhysiCell and the version 
number, such as below:                                                      
                                                                             
We implemented and solved the model using PhysiCell (Version 1.9.1) [1].    
                                                                             
[1] A Ghaffarizadeh, R Heiland, SH Friedman, SM Mumenthaler, and P Macklin, 
    PhysiCell: an Open Source Physics-Based Cell Simulator for Multicellu-  
    lar Systems, PLoS Comput. Biol. 14(2): e1005991, 2018                   
    DOI: 10.1371/journal.pcbi.1005991                                       
                                                                            
Because PhysiCell extensively uses BioFVM, we suggest you also cite BioFVM  
    as below:                                                               
                                                                             
We implemented and solved the model using PhysiCell (Version 1.9.1) [1],    
with BioFVM [2] to solve the transport equations.                           
                                                                             
[1] A Ghaffarizadeh, R Heiland, SH Friedman, SM Mumenthaler, and P Macklin, 
    PhysiCell: an Open Source Physics-Based Cell Simulator for Multicellu-  
    lar Systems, PLoS Comput. Biol. 14(2): e1005991, 2018                   
    DOI: 10.1371/journal.pcbi.1005991                                       
                                                                             
[2] A Ghaffarizadeh, SH Friedman, and P Macklin, BioFVM: an efficient para- 
    llelized diffusive transport solver for 3-D biological simulations,     
    Bioinformatics 32(8): 1256-8, 2016. DOI: 10.1093/bioinformatics/btv730 
    
If you use PhysiBOSS, please cite:

    G. Letort, A. Montagud, G. Stoll, R. Heiland, E. Barillot, P. Macklin, 
    A. Zinovyev, and L. Calzone. PhysiBoSS: a multi-scale agent based 
    modelling framework integrating physical dimension and cell signalling. 
    Bioinformatics 35(7):1188-96, 2019. DOI: 10.1093/bioinformatics/bty766.

If you use libRoadrunner, please cite:

    Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias 
    König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro, libRoadRunner: 
    a high performance SBML simulation and analysis library, 
    Bioinformatics 31(20): 3315–21, 2015: DOI: 10.1093/bioinformatics/btv363

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