oncodiversity.jl
calculating patient diversity from VDJ CDR3 sequences recovered from patient BAM files
Science Score: 18.0%
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✓CITATION.cff file
Found CITATION.cff file -
○codemeta.json file
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○Scientific vocabulary similarity
Low similarity (4.2%) to scientific vocabulary
Last synced: 10 months ago
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Repository
calculating patient diversity from VDJ CDR3 sequences recovered from patient BAM files
Basic Info
- Host: GitHub
- Owner: mcfefa
- License: mit
- Language: Julia
- Default Branch: master
- Size: 19.7 MB
Statistics
- Stars: 1
- Watchers: 3
- Forks: 0
- Open Issues: 2
- Releases: 0
Created over 5 years ago
· Last pushed almost 5 years ago
Metadata Files
Readme
License
Citation
README.md
OncoDiversity
Calculating the generalized diversity index for individual patients across a variety of different cancer datasets, including:
- clustered single cell data
- individual CDR3 sequences recovered from bulk sequencing files (BAM files)
- SomaScan analyte intensities from blood samples
Installation
``` Pkg.develop(PackageSpec(url="https://github.com/mcfefa/OncoDiversity.jl"))
using OncoDiversity
```
Owner
- Name: Meghan Ferrall-Fairbanks
- Login: mcfefa
- Kind: user
- Location: Gainesville, Florida, USA
- Company: University of Florida
- Website: meghan.ferrall-fairbanks.com
- Twitter: DrMeghanFerrall
- Repositories: 4
- Profile: https://github.com/mcfefa
Citation (CITATION.bib)
@misc{OncoDiversity.jl,
author = {Meghan Ferrall-Fairbanks <meghan.ferrall.fairbanks@gmail.com> and contributors},
title = {OncoDiversity.jl},
url = {https://github.com/mcfefa/OncoDiversity.jl},
version = {v0.1.0},
year = {2020},
month = {9}
}