cm
Refactored code to extract and render slices from images, along with optional colorbar, in MATLAB
Science Score: 18.0%
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Low similarity (7.0%) to scientific vocabulary
Repository
Refactored code to extract and render slices from images, along with optional colorbar, in MATLAB
Basic Info
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- Stars: 0
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Metadata Files
README.md
cm
Version 0.2.0
See usage example in example.m
REQUIREMENT
- Matlab image processing toolbox
Description
cm (ColorMap) extracts a slice from an 3D matrix and renders it, returning graphical object handles of the image (fig) and the colorbar (cb) for easy editing and saving
Obligatory input:
imin : matrix representing your image (currently 3D only!)
pixdim : vector of length 3 denoting the pixel dimensions corresponding to the image
direction : slice direction [ 0 - 2 ]
slice : slice selection
Optional input:
mask : mask (will crop out region if specified)
limits : vector of length 2 that specifies intensity range (default: 100)
sf : scaling factor
interp : interpolation method that accompanies scaling ('bilinear', 'bicubic' or 'nearest')
mycm : colormap of choice, should be three-column matrix of RGB triplets (see example.m)
mycbopt : colorbar options, passed on to colorbar()
Output:
fig : graphical object handle of the rendered slice
cb : object handle for colorbar
See usage example in example.m
TODO
- function not tested on 2D input
- inputParser is nicely readable but slow, possibly replace with alternative
License
This project is licensed under the terms of the MIT License
Citation
Owner
- Login: bfranx
- Kind: user
- Repositories: 1
- Profile: https://github.com/bfranx
Citation (CITATION.md)
Please cite this project as follows: Bart Franx (2023), cm - version 0.1.0. url: github.com/bfranx/cm