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SimSpread

SimSpread is a novel approach for predicting interactions between two distinct set of nodes, query and target nodes, using a similarity measure vector between query nodes as a meta-description in combination with the network-based inference for link prediction.

https://github.com/cvigilv/simspread.jl

Science Score: 18.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    Academic email domains
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.2%) to scientific vocabulary

Keywords

cheminformatics julia-package prediction-model predictive-modeling
Last synced: 6 months ago · JSON representation ·

Repository

SimSpread is a novel approach for predicting interactions between two distinct set of nodes, query and target nodes, using a similarity measure vector between query nodes as a meta-description in combination with the network-based inference for link prediction.

Basic Info
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 3
  • Open Issues: 2
  • Releases: 1
Topics
cheminformatics julia-package prediction-model predictive-modeling
Created about 3 years ago · Last pushed about 1 year ago
Metadata Files
Readme License Citation

README.md

SimSpread.jl

Stable Dev Build Status

What is SimSpread.jl?

SimSpread.jl is a Julia implementation of the SimSpread formalism for link prediction. SimSpread is a novel approach for predicting interactions between two distinct set of nodes, query and target nodes, using a similarity measure vector between query nodes as a meta-description in combination with the network-based inference for link prediction.

Originally developed for the prediction of pharmacological targets for a chemical compound, this packages generalizes the method to enable the prediction of links between any pair of nodes, e.g., user-object, reader-book, buyer-product, etc.

Installation

The package can be installed using the Pkg Julia package directly from the Julia prompt with the following: ~~~ julia using Pkg; Pkg.add(url = "https://github.com/cvigilv/SimSpread.jl.git") ~~~

For the newest version (development version, may break): ~~~ julia using Pkg; Pkg.add(url = "https://github.com/cvigilv/SimSpread.jl.git", rev = "develop") ~~~

Support

Please open an issue for support.

Contributing

Please contribute using Github Flow. Create a branch, add commits, and open a pull request.

License

MIT license, refer to LICENSE for more information.

Owner

  • Name: Carlos Vigil-Vásquez
  • Login: cvigilv
  • Kind: user
  • Location: Santiago, Chile

Chilean biochemist, Neovim plugin developer, and JuliaLanguage enthusiast. Photographer from time to time.

Citation (CITATION.bib) 

@misc{SimSpread.jl,
	author  = {Carlos Vigil Vásquez <carlos.vigil.v@gmail.com> and contributors},
	title   = {SimSpread.jl},
	url     = {https://github.com/cvigilv/SimSpread.jl},
	version = {v0.1.0},
	year    = {2023},
	month   = {2}
}

GitHub Events

Total
  • Create event: 2
  • Commit comment event: 6
  • Issues event: 1
  • Release event: 2
  • Issue comment event: 1
  • Push event: 12
  • Pull request event: 1
Last Year
  • Create event: 2
  • Commit comment event: 6
  • Issues event: 1
  • Release event: 2
  • Issue comment event: 1
  • Push event: 12
  • Pull request event: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 2
  • Total pull requests: 2
  • Average time to close issues: less than a minute
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • cvigilv (1)
  • JuliaTagBot (1)
Pull Request Authors
  • cvigilv (2)
Top Labels
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Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
juliahub.com: SimSpread

SimSpread is a novel approach for predicting interactions between two distinct set of nodes, query and target nodes, using a similarity measure vector between query nodes as a meta-description in combination with the network-based inference for link prediction.

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 10.1%
Average: 38.8%
Forks count: 39.6%
Dependent packages count: 40.5%
Stargazers count: 64.9%
Last synced: 6 months ago