metagenomics-shell
Introduction to the Command Line for Metagenomics
Science Score: 64.0%
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 5 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
20 of 107 committers (18.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.9%) to scientific vocabulary
Keywords
carpentries-lab
command-line
english
lesson
metagenomics
peer-reviewed
shell
stable
Keywords from Contributors
carpentries
carpentries-incubator
alpha
data-carpentry
ecology
life-sciences
genome-mining
cwl
geospatial-data
helpwanted-list
Last synced: 4 months ago
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Repository
Introduction to the Command Line for Metagenomics
Basic Info
- Host: GitHub
- Owner: carpentries-lab
- License: other
- Language: Python
- Default Branch: gh-pages
- Homepage: https://carpentries-lab.github.io/metagenomics-shell/
- Size: 55.6 MB
Statistics
- Stars: 2
- Watchers: 6
- Forks: 8
- Open Issues: 0
- Releases: 1
Topics
carpentries-lab
command-line
english
lesson
metagenomics
peer-reviewed
shell
stable
Created almost 5 years ago
· Last pushed about 1 year ago
Metadata Files
Readme
Contributing
License
Code of conduct
Citation
Authors
README.md
Introduction to the Command Line for Metagenomics
An introduction lesson to the Unix shell for people working with metagenomics data. This lesson is part of the Metagenomics Workshop.
Contribution
Make a suggestion or correct an error by raising an Issue.
Code of Conduct
All participants should agree to abide by the Data Carpentry Code of Conduct.
Maintainer(s)
Current maintainers of this lesson are
- Nelly Selem Mojica
- Claudia Zirion Martinez
- Aaron Espinosa Jaime
- Jose Abel Lovaco Flores
- Diego Garfias Gallegos
Authors
A list of contributors to the lesson can be found in AUTHORS
Citation
Please cite as:
Claudia Zirión Martínez; Diego Garfias Gallegos; Tania Vanessa Arellano Fernández; Aarón Espinosa Jaime; Edder D Bustos Díaz; José Abel Lovaco Flores; Luis Gerardo Tejero Gómez; J Abraham Avelar Rivas; Nelly Sélem (March , 2023) A Data Carpentry- Style Metagenomics Workshop https://doi.org/10.5281/zenodo.7713413
Owner
- Name: The Carpentries Lab
- Login: carpentries-lab
- Kind: organization
- Repositories: 3
- Profile: https://github.com/carpentries-lab
Citation (CITATION)
Please cite as: Nelly Sélem Mojica; Diego Garfias Gallegos; Claudia Zirión Martínez; Jesús Abraham Avelar Rivas; Aaron Jaime Espinosa; Abel Lovaco Flores; Tania Vanessa Arellano Fernandez (2022, Jan). Metagenomics for Software Carpentry lesson, Jan 2022. Zenodo. https://doi.org/10.5281/zenodo.4285900
GitHub Events
Total
- Watch event: 1
- Push event: 1
- Fork event: 3
Last Year
- Watch event: 1
- Push event: 1
- Fork event: 3
Committers
Last synced: almost 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Erin Becker | e****r@g****m | 123 |
| Greg Wilson | g****n@t****m | 95 |
| Czirion | 7****n | 73 |
| François Michonneau | f****u@g****m | 67 |
| Raniere Silva | r****e@r****m | 65 |
| J. Abel Lovaco | 6****4 | 41 |
| Nelly Sélem | n****5@h****m | 40 |
| Anita Schürch | a****h@g****m | 29 |
| Raniere Silva | r****e@i****r | 24 |
| Abigail Cabunoc | a****c@o****a | 24 |
| Sheldon McKay | s****y@g****m | 22 |
| Maxim Belkin | m****n@g****m | 21 |
| aaronejaime | 4****e | 18 |
| Vanessaarfer | 5****r | 17 |
| jessicamizzi | j****i@g****m | 17 |
| AbrahamAvelar | j****r@g****m | 16 |
| Bwanya Brian | 4****a | 14 |
| Sue McClatchy | s****y | 14 |
| Diego Garfias Gallegos | 6****e | 13 |
| Tracy Teal | t****t@i****g | 11 |
| Katrin Leinweber | 9****r | 10 |
| Akshay Paropkari | a****i | 10 |
| amyehodge | a****e@s****u | 9 |
| NBKingsley | n****y@u****u | 7 |
| Shannon EK Joslin | s****n@u****u | 7 |
| hoytpr | p****t@o****u | 6 |
| Bianca Peterson | b****7@g****m | 4 |
| Rémi Emonet | r****t@r****e | 4 |
| Piotr Banaszkiewicz | p****r@b****g | 4 |
| David Mawdsley | d****y@m****k | 4 |
| and 77 more... | ||
Committer Domains (Top 20 + Academic)
ucdavis.edu: 4
ime.unicamp.br: 2
idyll.org: 2
tremily.us: 1
jareborg.se: 1
cpp.edu: 1
utoronto.ca: 1
llnl.gov: 1
mimuw.edu.pl: 1
carpentries.org: 1
manchester.ac.uk: 1
banaszkiewicz.org: 1
reverse--com.heeere: 1
okstate.edu: 1
stanford.edu: 1
oicr.on.ca: 1
rgaiacs.com: 1
my.uri.edu: 1
brueffer.io: 1
vort.org: 1
tudelft.nl: 1
email.arizona.edu: 1
wisc.edu: 1
asu.edu: 1
stat.ubc.ca: 1
usc.edu: 1
students.mq.edu.au: 1
nevada.unr.edu: 1
Issues and Pull Requests
Last synced: almost 2 years ago
All Time
- Total issues: 0
- Total pull requests: 6
- Average time to close issues: N/A
- Average time to close pull requests: about 1 month
- Total issue authors: 0
- Total pull request authors: 3
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 5
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: about 22 hours
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tobyhodges (1)
Pull Request Authors
- tobyhodges (3)
- bwanya (2)
- MarioAleman (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
Gemfile
rubygems
- github-pages >= 0 development