dea-intertidal

Generating intertidal elevation, exposure and extents from satellite earth observation data and ocean tide modelling

https://github.com/geoscienceaustralia/dea-intertidal

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 9 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (10.6%) to scientific vocabulary

Keywords

coastal digital-earth-australia digital-elevation-model earth-observation intertidal-zone landsat remote-sensing sentinel-2
Last synced: 6 months ago · JSON representation ·

Repository

Generating intertidal elevation, exposure and extents from satellite earth observation data and ocean tide modelling

Basic Info
  • Host: GitHub
  • Owner: GeoscienceAustralia
  • License: apache-2.0
  • Language: Jupyter Notebook
  • Default Branch: develop
  • Homepage:
  • Size: 208 MB
Statistics
  • Stars: 19
  • Watchers: 5
  • Forks: 5
  • Open Issues: 20
  • Releases: 12
Topics
coastal digital-earth-australia digital-elevation-model earth-observation intertidal-zone landsat remote-sensing sentinel-2
Created over 3 years ago · Last pushed 7 months ago
Metadata Files
Readme License Citation

README.md

Digital Earth Australia Intertidal

Digital Earth Australia Intertidal

DOI License codecov example workflow

License: The code in this repository is licensed under the Apache License, Version 2.0. Digital Earth Australia data is licensed under the Creative Commons by Attribution 4.0 license.

Contact: For assistance with any of the Python code or Jupyter Notebooks in this repository, please post a Github issue. For questions or more information about DEA Intertidal, email earth.observation@ga.gov.au.

To cite:

Bishop-Taylor, R., Sagar, S., Lymburner, L., Beaman, R.L., 2019. Between the tides: modelling the elevation of Australia's exposed intertidal zone at continental scale. Estuarine, Coastal and Shelf Science. https://doi.org/10.1016/j.ecss.2019.03.006

Sagar, S., Phillips, C., Bala, B., Roberts, D., Lymburner, L., 2018. Generating continental scale pixel-based surface reflectance composites in coastal regions with the use of a multi-resolution tidal model. Remote Sensing. 10, 480. https://doi.org/10.3390/rs10030480

Sagar, S., Roberts, D., Bala, B., Lymburner, L., 2017. Extracting the intertidal extent and topography of the Australian coastline from a 28 year time series of Landsat observations. Remote Sensing of Environment 195, 153-169. https://doi.org/10.1016/j.rse.2017.04.009


The DEA Intertidal product suite maps the changing elevation, exposure and tidal characteristics of Australia's exposed intertidal zone, the complex zone that defines the interface between land and sea. It is the next generation of DEA's intertidal products that have been used across government and industry to help better characterise and understand this complex zone that defines the interface between land and sea.

Incorporating both Sentinel-2 and Landsat data, the product suite provides an annual 10 m resolution elevation product for the intertidal zone, enabling users to better monitor and understand some of the most dynamic regions of Australia's coastlines. Utilising an improved tidal modelling capability, the product suite includes a continental scale mapping of intertidal exposure over time, enabling scientists and managers to integrate the data into ecological and migratory species applications and modelling.

Repository structure

The DEA Intertidal Github repository contains the following important sections: * intertidal: The DEA Intertidal Python package, containing modules required for loading data, tide modelling, intertidal elevation, and exposure calculations * notebooks: Jupyter Notebooks providing workflows for generating key DEA Intertidal outputs. Importantly: * notebooks/Intertidal_CLI.ipynb: For running the entire DEA Intertidal workflow via the Command Line Interface * notebooks/Intertidal_workflow.ipynb: For running the entire DEA Intertidal workflow via interactive notebook cells * notebooks/Intertidal_elevation.ipynb: For customising and running the DEA Intertidal Elevation portion of the workflow * notebooks/Intertidal_elevation_stac.ipynb: For running DEA Intertidal Elevation on global satellite data loaded from Microsoft Planetary Computer using STAC metadata * data: Contains required raw input data files and output interim and processed outputs * metadata: Open Data Cube (ODC) metadata required for indexing DEA Intertidal into an ODC datacube * tests: Unit and integration tests, including automatically generated validation test results

Owner

  • Name: Geoscience Australia
  • Login: GeoscienceAustralia
  • Kind: organization
  • Location: Canberra, Australia

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite Bishop-Taylor et al. 2019."
authors:
  - given-names: Robbi
    family-names: Bishop-Taylor
    affiliation: Geoscience Australia
    orcid: 'https://orcid.org/0000-0002-1533-2599'
  - given-names: Stephen
    family-names: Sagar
    affiliation: Geoscience Australia
  - given-names: Leo
    family-names: Lymburner
    affiliation: Geoscience Australia
title: "Digital Earth Australia Intertidal"
doi: 10.1016/j.ecss.2019.03.006
url: "https://github.com/GeoscienceAustralia/dea-intertidal"
preferred-citation:
  type: article
  authors:
  - given-names: Robbi
    family-names: Bishop-Taylor
    affiliation: Geoscience Australia
    orcid: 'https://orcid.org/0000-0002-1533-2599'
  - given-names: Stephen
    family-names: Sagar
    affiliation: Geoscience Australia
  - given-names: Leo
    family-names: Lymburner
    affiliation: Geoscience Australia
  - given-names: Robin J.
    family-names: Beaman
    affiliation: James Cook University
  doi: "10.1016/j.ecss.2019.03.006"
  journal: "Estuarine, Coastal and Shelf Science"
  title: "Between the tides: Modelling the elevation of Australia's exposed intertidal zone at continental scale"
  volume: 223
  year: 2019
keywords:
  - Intertidal
  - Landsat
  - Earth Observation
  - Digital Earth Australia
license: Apache-2.0

GitHub Events

Total
  • Fork event: 1
  • Create event: 39
  • Commit comment event: 1
  • Release event: 3
  • Issues event: 11
  • Watch event: 8
  • Delete event: 24
  • Member event: 2
  • Issue comment event: 39
  • Push event: 198
  • Pull request review comment event: 26
  • Pull request review event: 53
  • Pull request event: 66
Last Year
  • Fork event: 1
  • Create event: 39
  • Commit comment event: 1
  • Release event: 3
  • Issues event: 11
  • Watch event: 8
  • Delete event: 24
  • Member event: 2
  • Issue comment event: 39
  • Push event: 198
  • Pull request review comment event: 26
  • Pull request review event: 53
  • Pull request event: 66

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 208
  • Total Committers: 3
  • Avg Commits per committer: 69.333
  • Development Distribution Score (DDS): 0.236
Past Year
  • Commits: 173
  • Committers: 3
  • Avg Commits per committer: 57.667
  • Development Distribution Score (DDS): 0.26
Top Committers
Name Email Commits
Robbi Bishop-Taylor R****r@g****u 159
Claire Phillips c****s@g****u 45
Vanessa Newey v****y 4
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 33
  • Total pull requests: 125
  • Average time to close issues: 29 days
  • Average time to close pull requests: 7 days
  • Total issue authors: 4
  • Total pull request authors: 5
  • Average comments per issue: 0.39
  • Average comments per pull request: 0.72
  • Merged pull requests: 103
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 11
  • Pull requests: 59
  • Average time to close issues: 25 days
  • Average time to close pull requests: 9 days
  • Issue authors: 4
  • Pull request authors: 5
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.92
  • Merged pull requests: 44
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • robbibt (22)
  • erialC-P (9)
  • vnewey (1)
  • TendouArisu (1)
Pull Request Authors
  • robbibt (74)
  • erialC-P (29)
  • vnewey (21)
  • lars-fillmore (2)
  • alexgleith (1)
Top Labels
Issue Labels
bug (3) v1.0.0 (2) important (1) enhancement (1)
Pull Request Labels
v1.0.0 (14) enhancement (2)

Dependencies

.github/workflows/dea-intertidal-image.yml actions
  • actions/checkout v3 composite
  • aws-actions/configure-aws-credentials v4 composite
  • aws-actions/configure-aws-credentials v1 composite
  • codecov/codecov-action v3 composite
  • mshick/add-pr-comment v2 composite
  • stefanzweifel/git-auto-commit-action v4 composite
  • whoan/docker-build-with-cache-action master composite
Dockerfile docker
  • ghcr.io/osgeo/gdal ubuntu-small-3.7.3 build
requirements.in pypi
  • Shapely ==2.0.1
  • aiohttp *
  • botocore *
  • click ==8.1.3
  • datacube ==1.8.13
  • dea-tools ==0.3.2.dev55
  • eodatasets3 ==0.30.4
  • geopandas ==0.13.2
  • matplotlib ==3.7.1
  • mdutils *
  • numpy ==1.24.3
  • odc-algo ==0.2.3
  • odc-geo ==0.4.3
  • odc-ui *
  • pandas ==1.5.3
  • pyTMD ==2.0.5
  • pygeos ==0.14
  • pyproj ==3.4.1
  • pytest *
  • pytest-cov *
  • pytest-dependency *
  • pytz ==2023.3
  • rasterio ==1.3.4
  • rioxarray *
  • scikit_image ==0.19.3
  • scikit_learn ==1.2.2
  • scipy ==1.10.1
  • seaborn ==0.13.0
  • sunriset ==1.0
  • tqdm ==4.65.0
  • xarray ==2023.1.0
  • xskillscore ==0.0.24
setup.py pypi