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metafast

Lightning fast & automated metagenomic pipeline powered by Nextflow

https://github.com/muneebdev7/metafast

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Lightning fast & automated metagenomic pipeline powered by Nextflow

Basic Info
  • Host: GitHub
  • Owner: muneebdev7
  • License: mit
  • Language: Nextflow
  • Default Branch: master
  • Homepage:
  • Size: 224 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Created over 1 year ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation

Owner

  • Name: Muneeb Nasir
  • Login: muneebdev7
  • Kind: user
  • Location: Pakistan

Biotechnologist | Bioinformatician | AI & ML enthusiast | Automation in Bioinformatics | Currently developing a Nextflow pipeline

GitHub Events

Total
  • Issues event: 2
  • Delete event: 2
  • Push event: 13
  • Pull request event: 2
  • Create event: 3
Last Year
  • Issues event: 2
  • Delete event: 2
  • Push event: 13
  • Pull request event: 2
  • Create event: 3

Dependencies

.github/workflows/awsfulltest.yml actions
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.github/workflows/awstest.yml actions
  • actions/upload-artifact v4 composite
  • seqeralabs/action-tower-launch v2 composite
.github/workflows/branch.yml actions
  • mshick/add-pr-comment b8f338c590a895d50bcbfa6c5859251edc8952fc composite
.github/workflows/ci.yml actions
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  • nf-core/setup-nextflow v2 composite
.github/workflows/clean-up.yml actions
  • actions/stale 28ca1036281a5e5922ead5184a1bbf96e5fc984e composite
.github/workflows/download_pipeline.yml actions
  • actions/setup-python 82c7e631bb3cdc910f68e0081d67478d79c6982d composite
  • eWaterCycle/setup-apptainer 4bb22c52d4f63406c49e94c804632975787312b3 composite
  • jlumbroso/free-disk-space 54081f138730dfa15788a46383842cd2f914a1be composite
  • nf-core/setup-nextflow v2 composite
.github/workflows/fix-linting.yml actions
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.github/workflows/linting.yml actions
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  • actions/upload-artifact 65462800fd760344b1a7b4382951275a0abb4808 composite
  • nf-core/setup-nextflow v2 composite
  • pietrobolcato/action-read-yaml 1.1.0 composite
.github/workflows/linting_comment.yml actions
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.github/workflows/release-announcements.yml actions
  • actions/setup-python 82c7e631bb3cdc910f68e0081d67478d79c6982d composite
  • rzr/fediverse-action master composite
  • zentered/bluesky-post-action 80dbe0a7697de18c15ad22f4619919ceb5ccf597 composite
.github/workflows/template_version_comment.yml actions
  • actions/checkout 0ad4b8fadaa221de15dcec353f45205ec38ea70b composite
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modules/nf-core/bwa/index/meta.yml cpan
modules/nf-core/bwa/mem/meta.yml cpan
modules/nf-core/fastp/meta.yml cpan
modules/nf-core/fastqc/meta.yml cpan
modules/nf-core/megahit/meta.yml cpan
modules/nf-core/metabat2/jgisummarizebamcontigdepths/meta.yml cpan
modules/nf-core/metabat2/metabat2/meta.yml cpan
modules/nf-core/multiqc/meta.yml cpan
modules/nf-core/samtools/index/meta.yml cpan
modules/nf-core/samtools/sort/meta.yml cpan
subworkflows/nf-core/utils_nextflow_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfcore_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfschema_plugin/meta.yml cpan
modules/nf-core/bwa/index/environment.yml pypi
modules/nf-core/bwa/mem/environment.yml pypi
modules/nf-core/fastp/environment.yml pypi
modules/nf-core/fastqc/environment.yml pypi
modules/nf-core/megahit/environment.yml pypi
modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml pypi
modules/nf-core/metabat2/metabat2/environment.yml pypi
modules/nf-core/multiqc/environment.yml pypi
modules/nf-core/samtools/index/environment.yml pypi
modules/nf-core/samtools/sort/environment.yml pypi