divand-singularity
Singularity container for DIVAnd
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.3%) to scientific vocabulary
Repository
Singularity container for DIVAnd
Basic Info
- Host: GitHub
- Owner: gher-uliege
- License: gpl-2.0
- Language: Singularity
- Default Branch: master
- Size: 61.5 KB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 2
Metadata Files
README.md
DIVAnd-singularity
Singularity container for DIVAnd, the interpolation tool (https://github.com/gher-uliege/DIVAnd.jl).
The container installs the last stable release of Julia, DIVAnd and other required Julia packages.
Dependencies
- Install singularity: https://sylabs.io/docs/
Building
After checking out the source, the singularity container is build using:
bash
rm -f DIVAnd.sif; sudo singularity build DIVAnd.sif Singularity
The first command is only needed if you already had the .sif file in your system.
The build operation lasts severall minutes due to the download and installation of languages and libraries.
Download
From the GitHub actions
- go to https://github.com/gher-uliege/DIVAnd-singularity/actions,
- choose the lastest commit,
- go to artefact,
- download and unzip the image file.
Running the container
There are two ways to run the container:
1. Without specifying a Julia script
bash
singularity run DIVAnd.sif
This gives access to a Julia terminal, where commands and scripts can be executed.
2. By specifying the script to be run
bash
singularity run DIVAnd.sif my_script.jl
(where my_script.jl has to be substitued by the correct file name).
Acknowledgements
The development of this container has been made possible thanks to PHIDIAS project (2019-2022).
The PHIDIAS project has received funding from the European Union's Connecting Europe Facility under grant agreement n° INEA/CEF/ICT/A2018/1810854.
Owner
- Name: GHER
- Login: gher-uliege
- Kind: organization
- Location: Sart Tilman, Liège, Belgium
- Website: https://www.gher.uliege.be
- Twitter: GHER_ULiege
- Repositories: 48
- Profile: https://github.com/gher-uliege
The GHER is a research group of the University of Liège. It is focused on marine and environmental study and modelling.
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Barth
given-names: Alexander
orcid: https://orcid.org/0000-0003-2952-5997
- family-names: Troupin
given-names: Charles
orcid: https://orcid.org/0000-0002-0265-1021
title: "DIVAnd-singularity: V1.0.1"
version: 1.0.1
doi: 10.5281/zenodo.7014263
date-released: 2023-02-13
url: "https://github.com/gher-uliege/DIVAnd-singularity"
GitHub Events
Total
- Push event: 15
Last Year
- Push event: 15
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 0
- Total pull requests: 5
- Average time to close issues: N/A
- Average time to close pull requests: about 1 hour
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.2
- Merged pull requests: 5
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- ctroupin (4)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v1 composite
- actions/setup-go v1 composite
- actions/upload-artifact v1 composite