paquetedaf

What the Package Does (One Line, Title Case)

https://github.com/dabiguina94/paquetedaf

Repository

What the Package Does (One Line, Title Case)

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
    collapse = TRUE,
    comment = "#>",
    fig.path = "man/figures/README-",
    out.width = "100%"
)
```

# PaqueteDaf


[![GitHub issues](https://img.shields.io/github/issues/Dabiguina94/PaqueteDaf)](https://github.com/Dabiguina94/PaqueteDaf/issues)
[![GitHub pulls](https://img.shields.io/github/issues-pr/Dabiguina94/PaqueteDaf)](https://github.com/Dabiguina94/PaqueteDaf/pulls)
[![Bioc release status](http://www.bioconductor.org/shields/build/release/bioc/PaqueteDaf.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/PaqueteDaf)
[![Bioc devel status](http://www.bioconductor.org/shields/build/devel/bioc/PaqueteDaf.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/PaqueteDaf)
[![Bioc downloads rank](https://bioconductor.org/shields/downloads/release/PaqueteDaf.svg)](http://bioconductor.org/packages/stats/bioc/PaqueteDaf/)
[![Bioc support](https://bioconductor.org/shields/posts/PaqueteDaf.svg)](https://support.bioconductor.org/tag/PaqueteDaf)
[![Bioc history](https://bioconductor.org/shields/years-in-bioc/PaqueteDaf.svg)](https://bioconductor.org/packages/release/bioc/html/PaqueteDaf.html#since)
[![Bioc last commit](https://bioconductor.org/shields/lastcommit/devel/bioc/PaqueteDaf.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/PaqueteDaf/)
[![Bioc dependencies](https://bioconductor.org/shields/dependencies/release/PaqueteDaf.svg)](https://bioconductor.org/packages/release/bioc/html/PaqueteDaf.html#since)


The goal of `PaqueteDaf` is to ...

## Installation instructions

Get the latest stable `R` release from [CRAN](http://cran.r-project.org/). Then install `PaqueteDaf` from [Bioconductor](http://bioconductor.org/) using the following code:

```{r 'install', eval = FALSE}
if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install("PaqueteDaf")
```

And the development version from [GitHub](https://github.com/Dabiguina94/PaqueteDaf) with:

```{r 'install_dev', eval = FALSE}
BiocManager::install("Dabiguina94/PaqueteDaf")
```
## Example

This is a basic example which shows you how to solve a common problem:

```{r example, eval = requireNamespace('PaqueteDaf')}
library("PaqueteDaf")
## basic example code
```

What is special about using `README.Rmd` instead of just `README.md`? You can include R chunks like so:

```{r cars}
summary(cars)
```

You'll still need to render `README.Rmd` regularly, to keep `README.md` up-to-date.

You can also embed plots, for example:

```{r pressure, echo = FALSE}
plot(pressure)
```

In that case, don't forget to commit and push the resulting figure files, so they display on GitHub!

## Citation

Below is the citation output from using `citation('PaqueteDaf')` in R. Please
run this yourself to check for any updates on how to cite __PaqueteDaf__.

```{r 'citation', eval = requireNamespace('PaqueteDaf')}
print(citation('PaqueteDaf'), bibtex = TRUE)
```

Please note that the `PaqueteDaf` was only made possible thanks to many other R and bioinformatics software authors, which are cited either in the vignettes and/or the paper(s) describing this package.

## Code of Conduct

Please note that the `PaqueteDaf` project is released with a [Contributor Code of Conduct](http://bioconductor.org/about/code-of-conduct/). By contributing to this project, you agree to abide by its terms.

## Development tools

* Continuous code testing is possible thanks to [GitHub actions](https://www.tidyverse.org/blog/2020/04/usethis-1-6-0/)  through `r BiocStyle::CRANpkg('usethis')`, `r BiocStyle::CRANpkg('remotes')`, and `r BiocStyle::CRANpkg('rcmdcheck')` customized to use [Bioconductor's docker containers](https://www.bioconductor.org/help/docker/) and `r BiocStyle::Biocpkg('BiocCheck')`.
* Code coverage assessment is possible thanks to [codecov](https://codecov.io/gh) and `r BiocStyle::CRANpkg('covr')`.
* The [documentation website](http://Dabiguina94.github.io/PaqueteDaf) is automatically updated thanks to `r BiocStyle::CRANpkg('pkgdown')`.
* The code is styled automatically thanks to `r BiocStyle::CRANpkg('styler')`.
* The documentation is formatted thanks to `r BiocStyle::CRANpkg('devtools')` and `r BiocStyle::CRANpkg('roxygen2')`.

For more details, check the `dev` directory.

This package was developed using `r BiocStyle::Biocpkg('biocthis')`.

Owner

Citation (CITATION)

pkgVer <- function(pkg) {
    if (!exists("meta") || is.null(meta)) meta <- packageDescription(pkg)
    ver <- meta$Version
    paste0('https://github.com/Dabiguina94/PaqueteDaf/', pkg, ' - R package version ', ver)
}

c(

    bibentry(bibtype="manual",
        title = "PaqueteDaf",
        author = personList(
            as.person("Dabiguina94")
        ),
        year = format(Sys.Date(), "%Y"),
        url = "http://www.bioconductor.org/packages/PaqueteDaf",
        note = pkgVer('PaqueteDaf'),
        doi = '10.18129/B9.bioc.PaqueteDaf'
    ),
    bibentry(bibtype="article",
        title = "PaqueteDaf",
        author = personList(
            as.person("Dabiguina94")
        ),
        year = format(Sys.Date(), "%Y"),
        journal = "bioRxiv",
        doi = "10.1101/TODO",
        url = "https://www.biorxiv.org/content/10.1101/TODO"
    )
)

GitHub Events