fucci-seq
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
Science Score: 41.0%
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✓CITATION.cff file
Found CITATION.cff file -
○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.3%) to scientific vocabulary
Keywords
Repository
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
Basic Info
- Host: GitHub
- Owner: jdblischak
- License: other
- Language: R
- Default Branch: master
- Homepage: https://jdblischak.github.io/fucci-seq/
- Size: 134 MB
Statistics
- Stars: 7
- Watchers: 4
- Forks: 4
- Open Issues: 2
- Releases: 0
Topics
Metadata Files
README.md
fucci-seq
This repository contains the supporting code and data for the study Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.
- View the analyses at https://jdblischak.github.io/fucci-seq
- View the processed data files available at https://jdblischak.github.io/fucci-seq/data-overview.html
- The raw data files are avaiable for download from GEO (GSE121265)
If you use any of the code or data in this repository, please cite our study:
@article{Hsiao01042020,
author = {Hsiao, Chiaowen Joyce and Tung, PoYuan and Blischak, John D. and Burnett, Jonathan E. and Barr, Kenneth A. and Dey, Kushal K. and Stephens, Matthew and Gilad, Yoav},
title = {Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis},
volume = {30},
number = {4},
pages = {611-621},
year = {2020},
doi = {10.1101/gr.247759.118},
URL = {http://genome.cshlp.org/content/30/4/611.abstract},
journal = {Genome Research}
}
Owner
- Name: John Blischak
- Login: jdblischak
- Kind: user
- Location: Ohio, USA
- Website: https://jdblischak.com/
- Twitter: jdblischak
- Repositories: 39
- Profile: https://github.com/jdblischak
Freelance Scientific Software Developer
Citation (CITATION)
@article{Hsiao01042020,
author = {Hsiao, Chiaowen Joyce and Tung, PoYuan and Blischak, John D. and Burnett, Jonathan E. and Barr, Kenneth A. and Dey, Kushal K. and Stephens, Matthew and Gilad, Yoav},
title = {Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis},
volume = {30},
number = {4},
pages = {611-621},
year = {2020},
doi = {10.1101/gr.247759.118},
URL = {http://genome.cshlp.org/content/30/4/611.abstract},
journal = {Genome Research}
}
@article {Hsiao526848,
author = {Hsiao, Chiaowen Joyce and Tung, PoYuan and Blischak, John D and Burnett, Jonathan and Barr, Kenneth and Dey, Kushal K and Stephens, Matthew and Gilad, Yoav},
title = {Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis},
elocation-id = {526848},
year = {2019},
doi = {10.1101/526848},
publisher = {Cold Spring Harbor Laboratory},
URL = {https://www.biorxiv.org/content/early/2019/02/03/526848},
eprint = {https://www.biorxiv.org/content/early/2019/02/03/526848.full.pdf},
journal = {bioRxiv}
}
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 5
- Total pull requests: 57
- Average time to close issues: 11 days
- Average time to close pull requests: 1 day
- Total issue authors: 4
- Total pull request authors: 3
- Average comments per issue: 2.4
- Average comments per pull request: 1.28
- Merged pull requests: 56
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jhsiao999 (2)
- apredeus (1)
- jdblischak (1)
- rfechtner (1)
Pull Request Authors
- jhsiao999 (52)
- jdblischak (4)
- kennethabarr (1)