Recent Releases of distributed-cellprofiler
distributed-cellprofiler - v2.2.0
What's Changed
Major changes: runbatchgeneral.py has been overhauled to be a CLI tool with support for Cell Painting Gallery file structure. It is more granularly configurable. Changes made in #148 and #179
Support for AWS IAM assumed roles added in #177
Improved handling of CellProfiler-plugins and update to current CellProfiler-plugins organization in #172
Adds WORKSPACE_BUCKET to the config so that image files and metadata files can be read off different buckets in #167
Adds JOB_RETRIES to the config so that the number of retries before sending a job to DeadMessages is configurable in #169
Adds ALWAYS_CONTINUE to the config so that the flag can be passed to CellProfiler in #169
Adds ASSIGN_IP to the config and defaults to false so that EC2 spot fleet instances do not automatically get assigned a private IP address since AWS now charges for that feature in #182
Minor changes: Bugfixes in #153, #173 Updated example fleet files in #163 and #171 Better error reporting in #174 Better printing of usage metrics to per_instance logs in #175
Contributors
- @Zitong-Chen-16 made their first contribution in https://github.com/DistributedScience/Distributed-CellProfiler/pull/163
- @emiglietta made their first contribution in https://github.com/DistributedScience/Distributed-CellProfiler/pull/166
- @ErinWeisbart
- @bethac07
- @fefossa
Full Changelog: https://github.com/DistributedScience/Distributed-CellProfiler/compare/v2.1.0...v2.2.0
- Python
Published by ErinWeisbart over 1 year ago
distributed-cellprofiler - Release 2.1
Includes improvements: Addition of setup_AWS.py to automate AWS infrastructure setup Addition of optional auto-monitor Addition of auto-dashboard creation Addition of auto-Deadletter queue creation Improved handling of AWS credentials in
Minor changes including: Printing monitor file name at the end of startCluster Monitor prints more information about spot fleet metrics
- Python
Published by ErinWeisbart almost 3 years ago