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454_transcriptome_snps

Procedure to obtain species specific SNPs based on low-coverage 454 transcriptome data from two species

https://github.com/lexnederbragt/454_transcriptome_snps

Science Score: 18.0%

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Procedure to obtain species specific SNPs based on low-coverage 454 transcriptome data from two species

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  • Host: GitHub
  • Owner: lexnederbragt
  • Default Branch: master
  • Homepage:
  • Size: 13.3 MB
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Created over 12 years ago · Last pushed over 12 years ago
Metadata Files
Readme Citation

README.md

Procedure to obtain species specific SNPs based on low-coverage 454 transcriptome data from two species

Extended materials and methods describing the SNP finding for the following two papers:

  • CN Trier, JS Hermansen, GP Sætre, RI Bailey (2014) Evidence for Mito-Nuclear and Sex-Linked Reproductive Barriers between the Hybrid Italian Sparrow and Its Parent Species. PLoS genetics 10 (1), e1004075
  • Jo S. Hermansen et al (2014), in preparation

Lex Nederbragt, February 2014. All material licensed under a Creative Commons CC0 license:

See the instructions file for how to use this material.

The person who associated a work with this deed has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law.

You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission.

(But be a good pall and refer to this repository, please)

Owner

  • Name: Lex Nederbragt
  • Login: lexnederbragt
  • Kind: user
  • Location: Norway
  • Company: University of Oslo

Assistant teaching professor at @UniOslo. Biologist, bioinformatician, educator, @thecarpentries instructor. He/him/his https://impactstory.org/u/lexnederbragt

Citation (CITATION.md) 

Lex Nederbragt, Procedure to obtain species specific SNPs based transcriptome data from two species. 
https://github.com/lexnederbragt/454_transcriptome_snps

Please also cite on of the following papers:

* CN Trier, JS Hermansen, GP Sætre, RI Bailey (2014) Evidence for Mito-Nuclear and Sex-Linked Reproductive Barriers between the Hybrid Italian Sparrow and Its Parent Species. [PLoS genetics 10 (1), e1004075](http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004075)
* Jo S. Hermansen et al (2014), in preparation

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