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boeken_tauopathies

Code repository for the single-molecule evaluation of tauopathies project led by Dorothea Boeken

https://github.com/dboeken/boeken_tauopathies

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
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    Academic publication links
    Links to: zenodo.org
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Code repository for the single-molecule evaluation of tauopathies project led by Dorothea Boeken

Basic Info
  • Host: GitHub
  • Owner: dboeken
  • License: mit
  • Language: Python
  • Default Branch: master
  • Size: 81.8 MB
Statistics
  • Stars: 1
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created 9 months ago · Last pushed 9 months ago
Metadata Files
Readme License Citation

README.md

DOI

Boeken_Tauopathies

This repository contains the analysis code associated with the Tauopathies single-molecule characterisation project, led by Dorothea Böken. This manuscript has been submitted for publication under the title "Small tau aggregates exhibit disease-specific molecular profiles across tauopathies".

This manuscript has been submitted as a preprint via BioRxiv here. A link to the final version will be provided upon publication.

Prerequisites

This analysis assumes a standard installation of Python 3 (v 3.10.5). For specific package requirements, see the environment.yml file, or create a new conda environment containing all packages by running conda create -f environment.yml. In addition to the analysis contained here, some simple statistical tests were performed using GraphPad Prism v 10.4.

Raw data

For convenience, example image files are provided here under the data folder. These data may be used to explore the workflows presented here as described below.

Workflow

Example raw images are provided here within the data folder to test the included analysis scripts.

Individual analyses are presented within the src folder. Where processing order is important for individual analyses, scripts have been numbered and should be run in order before unnumbered counterparts.

Owner

  • Login: dboeken
  • Kind: user

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