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inf-biox121_fall2014_de_novo_assembly

https://github.com/lexnederbragt/inf-biox121_fall2014_de_novo_assembly

Science Score: 18.0%

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Repository

Basic Info
  • Host: GitHub
  • Owner: lexnederbragt
  • Default Branch: master
  • Size: 15.5 MB
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  • Stars: 19
  • Watchers: 5
  • Forks: 5
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Created over 11 years ago · Last pushed over 11 years ago
Metadata Files
Readme Citation

README.md

INF-BIO5121/9121 fall 2014 de novo assembly

Course material for the de novo assembly part of the INF-BIOx121 course at Univ. of Oslo Fall 2014. Course website: https://wiki.uio.no/projects/clsi/index.php/INF-BIOX121_H14.

Thanks to

  • Nick Loman (@pathogenomenick), for the very first edition, see https://github.com/lexnederbragt/denovo-assembly-tutorial, and for making MinION data from the MinION Access Program available
  • The sequencing companies for access to sequencing data
  • Ben Langmead for the python De Bruijn Graph code
  • Titus Brown for the Assembly Exercise

Disclaimer

The tutorials in this repository only touch on some of the basics of the programs described. For detailed instructions, always consult the individual program's manual.

License

Unless my contract says otherwise (and I think it doesn't), or material is covered under an existing licence, all this material is released under a CC0 license.

Owner

  • Name: Lex Nederbragt
  • Login: lexnederbragt
  • Kind: user
  • Location: Norway
  • Company: University of Oslo

Assistant teaching professor at @UniOslo. Biologist, bioinformatician, educator, @thecarpentries instructor. He/him/his https://impactstory.org/u/lexnederbragt

Citation (CITATION.md) 

Please cite this work as

> Course material for the *de novo* assembly part of the INF-BIO5121 and INF-BIO9121 course 'High Throughput Sequencing technologies and bioinformatics analysis
' at University of Oslo, Fall 2014, by Lex Nederbragt
>
>https://github.com/lexnederbragt/INF-BIOx121_fall2014_de_novo_assembly

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