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galaxy-data-resource

https://github.com/blankenberg/galaxy-data-resource

Science Score: 18.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: blankenberg
  • License: other
  • Language: Python
  • Default Branch: master
  • Size: 61.9 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 11 years ago · Last pushed over 11 years ago
Metadata Files
Readme License Citation

README.txt 

GALAXY
======
http://galaxyproject.org/

The latest information about Galaxy is always available via the Galaxy
website above.

HOW TO START
============
Galaxy requires Python 2.6 or 2.7. To check your python version, run:

% python -V
Python 2.7.3

Start Galaxy:

% sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

You may wish to make changes from the default configuration. This can be done
in the config/galaxy.ini file. Tools can be either installed from the Tool Shed
or added manually. For details please see the Galaxy wiki: 

https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial


Not all dependencies are included for the tools provided in the sample
tool_conf.xml. A full list of external dependencies is available at:

https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies

Owner

  • Name: Daniel Blankenberg
  • Login: blankenberg
  • Kind: user
  • Location: Cleveland, OH, USA
  • Company: Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic

Hiring postdocs and devs https://blankenberglab.org/jobs

Citation (CITATION) 

If you use or extend Galaxy in your published work, please cite each of the
following publications:

- Goecks, J, Nekrutenko, A, Taylor, J and The Galaxy Team. "Galaxy: a
  comprehensive approach for supporting accessible, reproducible, and
  transparent computational research in the life sciences." 
  Genome Biol. 2010 Aug 25;11(8):R86.

- Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M,
  Nekrutenko A, Taylor J. "Galaxy: a web-based genome analysis tool for
  experimentalists". Current Protocols in Molecular Biology. 
  2010 Jan; Chapter 19:Unit 19.10.1-21.

- Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y,
  Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. "Galaxy:
  a platform for interactive large-scale genome analysis." 
  Genome Research. 2005 Oct; 15(10):1451-5.

See also: http://wiki.galaxyproject.org/CitingGalaxy



BibTeX format:

@article{goecks2010galaxy,
  title={Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences},
  author={Goecks, Jeremy and Nekrutenko, Anton and Taylor, James and The Galaxy Team},
  journal={Genome Biol},
  volume={11},
  number={8},
  pages={R86},
  year={2010}
}

@article{blankenberg2010galaxy,
  title={Galaxy: A Web-Based Genome Analysis Tool for Experimentalists},
  author={Blankenberg, Daniel and Kuster, Gregory Von and Coraor, Nathaniel and Ananda, Guruprasad and Lazarus, Ross and Mangan, Mary and Nekrutenko, Anton and Taylor, James},
  journal={Current protocols in molecular biology},
  pages={19--10},
  year={2010},
  publisher={John Wiley \& Sons, Inc.}
}

@article{giardine2005galaxy,
  title={Galaxy: a platform for interactive large-scale genome analysis},
  author={Giardine, Belinda and Riemer, Cathy and Hardison, Ross C and Burhans, Richard and Elnitski, Laura and Shah, Prachi and Zhang, Yi and Blankenberg, Daniel and Albert, Istvan and Taylor, James and Miller, Webb C and Kent, W James and Nekrutenko, Anton},
  journal={Genome research},
  volume={15},
  number={10},
  pages={1451--1455},
  year={2005},
  publisher={Cold Spring Harbor Lab}
}

GitHub Events

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Dependencies

client/package.json npm
  • grunt ^0.4.5 development
  • grunt-contrib-copy ^0.5.0 development
  • grunt-contrib-watch ^0.6.1 development
  • grunt-exec ^0.4.6 development
config/plugins/visualizations/charts/package.json npm
  • grunt ~0.4.1 development
  • grunt-cli ~0.1.9 development
  • grunt-contrib-requirejs ~0.4.3 development
config/plugins/visualizations/scatterplot/package.json npm
  • grunt ~0.4.1 development
  • grunt-cli ~0.1.9 development
  • grunt-contrib-concat ~0.3.0 development
  • grunt-contrib-handlebars ~0.5.10 development
  • grunt-contrib-uglify ~0.2.2 development
  • grunt-contrib-watch ~0.5.3 development
lib/galaxy/web/proxy/js/package.json npm
  • commander ~2.2
  • http-proxy 1.6.0
  • sqlite3 3.0.2
static/style/package.json npm
  • grunt ~0.4.1 development
  • grunt-contrib-clean 0.6.0 development
  • grunt-contrib-less ~0.7.0 development
  • grunt-recess ~0.3.5 development
  • grunt-spritesmith ~1.7.0 development
test/qunit/package.json npm
  • grunt ^0.4.4 development
  • grunt-contrib-qunit ^0.4.0 development
  • grunt-contrib-watch ~0.5.3 development
scripts/scramble/patches/python_daemon/setup.py pypi
  • lockfile *
  • setuptools *