Back to sequences - v0.7.0 kmer sequence coverage and other statistics

Outputs: - Number of nucleotides seen: the total number of nucleotides in the input file - Number of kmer seen: the total number of kmers in the input file - Number of kmer match: the total number of matches of the input kmers in the reads - The ratio between the Number of kmer match and the Number of kmer seen

When using the --output-mapping-positions the --out-sequences file contains for each output read the number of nucleotides of the read covered by at least one input kmer

Scientific Software - Peer-reviewed - Rust
Published by pierrepeterlongo about 1 year ago

Back to sequences - v0.6.8

• All logs go to stderr
• Optimized the display of positions of kmers on matching sequences

Scientific Software - Peer-reviewed - Rust
Published by pierrepeterlongo over 1 year ago

Back to sequences - v0.6.7

Input compressed zst format now accepted

Scientific Software - Peer-reviewed - Rust
Published by pierrepeterlongo over 1 year ago

Back to sequences - v0.6.6

There was a bug related to the parsing of the arguments when using the --in-filelist option to query multiple sequences. This release fixes the bug.

Scientific Software - Peer-reviewed - Rust
Published by pierrepeterlongo over 1 year ago

Back to sequences - v0.6.5

First official release.

Scientific Software - Peer-reviewed - Rust
Published by pierrepeterlongo over 1 year ago

Back to sequences -

Version 0.2.11

Scientific Software - Peer-reviewed - Rust
Published by pierrepeterlongo about 2 years ago