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idt-nextflow-poc

A proof of concept whole exome analysis pipeline for running on AWS EKS

https://github.com/idt-slowney/idt-nextflow-poc

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A proof of concept whole exome analysis pipeline for running on AWS EKS

Basic Info
  • Host: GitHub
  • Owner: idt-slowney
  • License: mit
  • Language: Nextflow
  • Default Branch: main
  • Size: 2.05 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created about 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog License Citation

Owner

  • Login: idt-slowney
  • Kind: user

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Dependencies

modules/nf-core/bwamem2/index/meta.yml cpan
modules/nf-core/bwamem2/mem/meta.yml cpan
modules/nf-core/custom/dumpsoftwareversions/meta.yml cpan
modules/nf-core/fastqc/meta.yml cpan
modules/nf-core/multiqc/meta.yml cpan
modules/nf-core/picard/bedtointervallist/meta.yml cpan
modules/nf-core/picard/collecthsmetrics/meta.yml cpan
modules/nf-core/picard/collectmultiplemetrics/meta.yml cpan
modules/nf-core/picard/collectwgsmetrics/meta.yml cpan
modules/nf-core/picard/createsequencedictionary/meta.yml cpan
modules/nf-core/picard/markduplicates/meta.yml cpan
modules/nf-core/picard/sortsam/meta.yml cpan
modules/nf-core/samtools/faidx/meta.yml cpan
modules/nf-core/seqtk/sample/meta.yml cpan
modules/nf-core/vardictjava/meta.yml cpan
subworkflows/nf-core/bam_qc_picard/meta.yml cpan
pyproject.toml pypi
modules/nf-core/bwamem2/index/environment.yml conda
  • bwa-mem2 2.2.1.*
modules/nf-core/bwamem2/mem/environment.yml conda
  • bwa-mem2 2.2.1.*
  • htslib 1.19.1.*
  • samtools 1.19.2.*
modules/nf-core/picard/bedtointervallist/environment.yml conda
  • picard 3.1.1.*
modules/nf-core/picard/collecthsmetrics/environment.yml conda
  • picard 3.1.1.*
modules/nf-core/picard/collectmultiplemetrics/environment.yml conda
  • picard 3.1.1.*
modules/nf-core/picard/collectwgsmetrics/environment.yml conda
  • picard 3.1.1.*
  • r-base
modules/nf-core/picard/createsequencedictionary/environment.yml conda
  • picard 3.1.1.*
modules/nf-core/picard/markduplicates/environment.yml conda
  • picard 3.1.1.*
modules/nf-core/picard/sortsam/environment.yml conda
  • picard 3.1.1.*
modules/nf-core/samtools/faidx/environment.yml conda
  • htslib 1.19.1.*
  • samtools 1.19.2.*
modules/nf-core/seqtk/sample/environment.yml conda
  • seqtk 1.4.*
modules/nf-core/vardictjava/environment.yml conda
  • vardict-java 1.8.3.*