er_mutualism
This repository includes the data, along with the analysis code used to for the study "Mutualism breakdown underpins evolutionary rescue in an obligate cross-feeding bacterial consortium" Melero-Jiménez et al. 202-.
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.6%) to scientific vocabulary
Repository
This repository includes the data, along with the analysis code used to for the study "Mutualism breakdown underpins evolutionary rescue in an obligate cross-feeding bacterial consortium" Melero-Jiménez et al. 202-.
Basic Info
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
ER_mutualism
This repository includes the data and analysis code used for the study "Reversion to metabolic autonomy underpins evolutionary rescue in a bacterial obligate mutualism" Melero-Jiménez et al. 202-.
Folder Descriptions: data.zip
- Crossresistanceexp: Contains the raw data related to cross-resistance experiments.
- GC_FS1: Holds raw data specific to the growth curves in Figure S1.
- GCFigure3B: Contains raw data for generating Figure 3B in the manuscript.
- Stress_response: Includes the raw data related to stress response experiments.
- Transfer data: Contains the raw data files associated with evolutionary rescue experiments.
Folder Descriptions: Data_R.zip
- Evolutionary experiment: Raw data from the complementary evolutionary rescue experiment (Figure S2).
- Growth curves mutants: Raw data for growth curves of isolates derived from both salinity and PNP evolutionary experiment (Figure S9).
Code Files
- CodeERmutualism.ipynb: Jupyter Notebook containing the analysis code used in this study, including scripts for generating the main results and figures.
- R1_code.ipynb: Code used for the new analysis included in this study after the first round of revisions.
Folder Descriptions: Final_Data_and_Code.zip
R2_code.ipynb: Jupyter Notebook containing the analysis code after the second round of revisions.Data: Contains the dataset used before the first revision (R1).Data_R: Includes the dataset after the first revision (R1).
Owner
- Name: Ignacio J. Melero-Jimenez
- Login: ignamel
- Kind: user
- Location: Madrid
- Company: @CBGP_Madrid
- Twitter: Ignamelero
- Repositories: 1
- Profile: https://github.com/ignamel
Focus on Experimental Evolution. PhD on Biodiversity and Environmental Sciences (@infoUMA). Postdoctoral Researcher at @CBGP_Madrid
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Melero-Jiménez
given-names: Ignacio J.
orcid: "https://orcid.org/0000-0003-1570-3828"
- family-names: Sorokin
given-names: Yael
- family-names: Merlin
given-names: Ami
- family-names: Li
given-names: Jiawei
- family-names: Couce
given-names: Alejandro
orcid: "https://orcid.org/0000-0002-4153-6018"
- family-names: Friedman
given-names: Jonathan
orcid: "https://orcid.org/0000-0001-8476-8030"
title: Code and data for article titled 'Mutualism breakdown underpins evolutionary rescue in an obligate cross-feeding bacterial consortium'
version: "v.1.0.0"
date-released: "2025-03-08"
GitHub Events
Total
- Release event: 1
- Push event: 6
- Create event: 1
Last Year
- Release event: 1
- Push event: 6
- Create event: 1