Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
2 of 4 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.5%) to scientific vocabulary
Repository
Wisconsin Lake Modeling Aggregation
Basic Info
- Host: GitHub
- Owner: USGS-R
- Language: R
- Default Branch: main
- Size: 120 MB
Statistics
- Stars: 2
- Watchers: 6
- Forks: 13
- Open Issues: 36
- Releases: 4
Metadata Files
README.md
mda.lakes
Model Data Assimilation - Lakes
By: Jordan Read, Luke Winslow, Gretchen Hansen
This code base is part of the modeling effort for Wisconsin Lakes. Please reference our paper on this work.
Functionality
Just musing here...
Want to encapsulate as much of the whole WiLMA running process in one file as possible. A single model run could look like this
```R library(WiLMA)
Setup and run model
runglmchained(siteid='805400', path='~/rundir')
the above function writes all relevant information for that lake to the directory
this includes grabbing the driver file and generating the NML file.
then runs the model
There could be different functions that run the model in different ways
runglm(siteid='805400', path='~/run_dir')
this does a non-chained run
Important: Why not have a separate "setup" function
That is challenging. We don't know if the user wants to do a chained run
so we may not setup the ice data (or it is wasted setup because it is not used)
So the key thing at this stage is having functions that setup the workspace
as they need them and run the model as they need them, leaving the NCDF files around
for later analysis.
Hmmm, how do the below functions know the lakeID?
standardized metadata file?
Once the model is run, calculated some habitat metrics
habitatmetrics = calculatehabitatchained(path='~/rundir') habitatmetricskrose = calculatehabitatchainedkrose(path='~/rundir')
Maybe compare to validation data
calval = runcomparevalidation(runpath='~/rundir') plotcalval(runpath='~/run_dir')
```
Disclaimer
This software is in the public domain because it contains materials that originally came from the U.S. Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy
Although this software program has been used by the U.S. Geological Survey (USGS), no warranty, expressed or implied, is made by the USGS or the U.S. Government as to the accuracy and functioning of the program and related program material nor shall the fact of distribution constitute any such warranty, and no responsibility is assumed by the USGS in connection therewith.
This software is provided "AS IS."
Owner
- Name: USGS-R
- Login: USGS-R
- Kind: organization
- Website: https://owi.usgs.gov/R/
- Repositories: 144
- Profile: https://github.com/USGS-R
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jordan S Read | j****d@u****v | 435 |
| Luke Winslow | l****w@u****v | 307 |
| Luke Winslow | l****w@g****m | 116 |
| unknown | l****w@I****t | 5 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 2 years ago
All Time
- Total issues: 47
- Total pull requests: 53
- Average time to close issues: about 2 months
- Average time to close pull requests: 13 days
- Total issue authors: 5
- Total pull request authors: 5
- Average comments per issue: 3.53
- Average comments per pull request: 0.42
- Merged pull requests: 50
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lawinslow (32)
- jordansread (11)
- ghost (2)
- ldecicco-USGS (1)
- wdwatkins (1)
Pull Request Authors
- lawinslow (29)
- jordansread (21)
- katrinleinweber (2)
- jesse-ross (1)
- ghost (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- R >= 3.0 depends
- lakeattributes >= 0.9.1 depends
- geoknife * enhances
- GLMr * imports
- accelerometry * imports
- dplyr * imports
- glmtools >= 0.10.2 imports
- httr * imports
- insol * imports
- jsonlite * imports
- lubridate * imports
- plyr * imports
- rLakeAnalyzer >= 1.5 imports
- sbtools * imports
- tidyr * imports