Data

Tools

Indexes

Applications

Experiments

Open Source Science

imta

Data and R code accompanying a literature review on plants as part of integrated multi-trophic aquaculture (IMTA).

https://github.com/lukaseamus/imta

Science Score: 31.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.3%) to scientific vocabulary

Keywords

algae aquaponics carbon-offsetting climate-change co-culture esc ggplot2 imta kelp literature-review macroalgae marine-biology marine-ecology meta meta-analysis plants polyculture r seaweed web-of-science
Last synced: 4 months ago · JSON representation ·

Repository

Data and R code accompanying a literature review on plants as part of integrated multi-trophic aquaculture (IMTA).

Basic Info
  • Host: GitHub
  • Owner: lukaseamus
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 23.5 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
algae aquaponics carbon-offsetting climate-change co-culture esc ggplot2 imta kelp literature-review macroalgae marine-biology marine-ecology meta meta-analysis plants polyculture r seaweed web-of-science
Created almost 6 years ago · Last pushed over 3 years ago
Metadata Files
Readme License Citation

README.md

IMTA

This repository contains data and R code accompanying the literature review Integrating plants improves aquaculture on the benefits that plants provide in integrated multi-trophic aquaculture (IMTA) systems.

The R code needed to perform the meta-analysis and plot the four figures is contained in the IMTA.R file.

Data files for each figure:

Figure 1 1. citations.csv: Web of Science citations report on "IMTA" and "IMTA AND (plant* OR seaweed* OR kelp* OR macroalga* OR alga*)".

  1. findings.csv: Findings of plant-related IMTA papers categorised into positive, negative and neutral as well as primary purpose of plant integration.

  2. plants.csv: Groups of plants and their co-cultured animals in IMTA systems referred to in the literature.

Figure 2 1. ammonium.csv: Reported ammonium uptake (μmol NH4+ gDW-1 h-1) for different macroalgae with initial ammonium concentrations given in μM.

  1. biofiltration.csv: Difference in biofiltration rate between macroalgae in monoculture and IMTA.

  2. growth.csv: Difference in growth rate between macroalgae in monoculture and IMTA.

Figure 3 1. production.csv: Seaweed production in t and income in $ t-1 for every country producing at least 130 t in 2017 (Reference: http://www.fao.org/3/ca5495t/ca5495t.pdf).

  1. hypoxia.csv: Coastal zones of hypoxia (Reference: 10.1126/science.1156401).

  2. Additional: Required area of seaweed farms to offset finfish and crustacean aquaculture (Reference: 10.1016/j.cub.2019.07.041) and change in mean sea surface temperature between present time and 2100 according to RCP8.5 (Reference: https://www.bio-oracle.org/downloads-to-email.php)

Figure 4 1. countries.csv: Seaweed production (Reference: http://www.fao.org/3/ca5495t/ca5495t.pdf) and number of papers (Web of Science) for all countries producing at least 130 t of seaweed and contributing to the scientific literature on plant-related IMTA.

  1. seaweeds.csv: Seaweed production (Reference: http://www.fao.org/3/i9540en/i9540en.pdf) and number of papers (Web of Science) for all seaweeds that have a global production of at least 34×103 t and appear in the scientific literature on plant-related IMTA.

  2. image.png: Photograph of female-driven tropical seaweed farming in Zanzibar (Credits: Jose Paula, 2014).

Luka Seamus Wright

Owner

  • Name: Luka Seamus Wright
  • Login: lukaseamus
  • Kind: user
  • Location: Perth
  • Company: UWA Oceans Institute

Marine microbial and plant ecology

Citation (citations.csv) 

year,citations,group
2000,0,other
2001,3,other
2002,3,other
2003,4,other
2004,5,other
2005,4,other
2006,3,other
2007,10,other
2008,9,other
2009,21,other
2010,26,other
2011,43,other
2012,71,other
2013,93,other
2014,106,other
2015,130,other
2016,201,other
2017,254,other
2018,273,other
2019,373,other
2000,0,plants
2001,0,plants
2002,0,plants
2003,0,plants
2004,0,plants
2005,0,plants
2006,0,plants
2007,0,plants
2008,3,plants
2009,6,plants
2010,25,plants
2011,55,plants
2012,79,plants
2013,134,plants
2014,145,plants
2015,204,plants
2016,363,plants
2017,416,plants
2018,552,plants
2019,696,plants

GitHub Events

Total
Last Year

Committers

Last synced: almost 2 years ago

All Time
  • Total Commits: 26
  • Total Committers: 2
  • Avg Commits per committer: 13.0
  • Development Distribution Score (DDS): 0.038
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Luka Seamus Wright 4****s 25
Luka Seamus Wright l****a@w****t 1
Committer Domains (Top 20 + Academic)
wright.it: 1

Issues and Pull Requests

Last synced: almost 2 years ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels