labelledarrays.jl-2ee39098-c373-598a-b85f-a56591580800
Last mirrored from https://github.com/JuliaDiffEq/LabelledArrays.jl.git on 2019-11-19T00:07:59.769-05:00 by @UnofficialJuliaMirrorBot via Travis job 481.20 , triggered by Travis cron job on branch "master"
https://github.com/unofficialjuliamirror/labelledarrays.jl-2ee39098-c373-598a-b85f-a56591580800
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Last mirrored from https://github.com/JuliaDiffEq/LabelledArrays.jl.git on 2019-11-19T00:07:59.769-05:00 by @UnofficialJuliaMirrorBot via Travis job 481.20 , triggered by Travis cron job on branch "master"
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Metadata Files
README.md
LabelledArrays.jl
LabelledArrays.jl is a package which provides arrays with labels, i.e. they are
arrays which map, broadcast, and all of that good stuff, but their components
are labelled. Thus for instance you can set that the second component is named
:second and retrieve it with A.second.
SLArrays
The SLArray and SLVector macros are for creating static LabelledArrays.
First you create the type and then you can use that constructor to generate
instances of the labelled array.
```julia ABC = @SLVector (:a,:b,:c) A = ABC(1,2,3) A.a == 1
ABCD = @SLArray (2,2) (:a,:b,:c,:d) B = ABCD(1,2,3,4) B.c == 3 B[2,2] == B.d ```
Here we have that A == [1,2,3] and for example A.b == 2. We can create a
typed SLArray via:
julia
SVType = @SLVector Float64 (:a,:b,:c)
Alternatively, you can also construct a static labelled array using the
SLVector constructor by writing out the entries as keyword arguments:
julia
julia> SLVector(a=1, b=2, c=3)
3-element SLArray{Tuple{3},1,(:a, :b, :c),Int64}:
1
2
3
For general N-dimensional labelled arrays, you need to specify the size
(Tuple{dim1,dim2,...}) as the type parameter to the SLArray constructor:
julia
julia> SLArray{Tuple{2,2}}(a=1, b=2, c=3, d=4)
2×2 SLArray{Tuple{2,2},2,(:a, :b, :c, :d),Int64}:
1 3
2 4
Constructing copies with some items changed is supported by a keyword constructor whose first argument is the source and additonal keyword arguments change several entries.
julia
julia> v1 = SLVector(a=1.1, b=2.2, c=3.3);
julia> v2 = SLVector(v1; b=20.20, c=30.30 )
3-element SLArray{Tuple{3},Float64,1,3,(:a, :b, :c)}:
1.1
20.2
30.3
julia
julia> ABCD = @SLArray (2,2) (:a,:b,:c,:d);
julia> B = ABCD(1,2,3,4);
julia> B2 = SLArray(B; c=30 )
2×2 SLArray{Tuple{2,2},Int64,2,4,(:a, :b, :c, :d)}:
1 30
2 4
One can also specify the indices directly. ```julia julia> EFG = @SLArray (2,2) (e=1:3, f=4, g=2:4); julia> y = EFG(1.0,2.5,3.0,5.0) 2×2 SLArray{Tuple{2,2},Float64,2,4,(e = 1:3, f = 4, g = 2:4)}: 1.0 3.0 2.5 5.0
julia> y.g 3-element view(reshape(::StaticArrays.SArray{Tuple{2,2},Float64,2,4}, 4), 2:4) with eltype Float64: 2.5 3.0 5.0
julia> Arr = @SLArray (2, 2) (a = (2, :), b = 3); julia> z = Arr(1, 2, 3, 4); julia> z.a 2-element view(::StaticArrays.SArray{Tuple{2,2},Int64,2,4}, 2, :) with eltype Int64: 2 4 ```
LArrays
The LArrayss are fully mutable arrays with labels. There is no performance
loss by using the labelled instead of indexing. Using the macro with values
and labels generates the labelled array with the given values:
julia
A = @LArray [1,2,3] (:a,:b,:c)
A.a == 1
One can generate a labelled array with undefined values by instead giving the dimensions:
julia
A = @LArray Float64 (2,2) (:a,:b,:c,:d)
W = rand(2,2)
A .= W
A.d == W[2,2]
or using an @LVector shorthand:
julia
A = @LVector Float64 (:a,:b,:c,:d)
A .= rand(4)
As with SLArray, alternative constructors exist that use the keyword argument
form:
```julia julia> LVector(a=1, b=2, c=3) 3-element LArray{Int64,1,(:a, :b, :c)}: 1 2 3
julia> LArray((2,2); a=1, b=2, c=3, d=4) # need to specify size as first argument 2×2 LArray{Int64,2,(:a, :b, :c, :d)}: 1 3 2 4 ```
One can also specify the indices directly.
julia
julia> z = @LArray [1.,2.,3.] (a = 1:2, b = 2:3);
julia> z.b
2-element view(::Array{Float64,1}, 2:3) with eltype Float64:
2.0
3.0
julia> z = @LArray [1 2; 3 4] (a = (2, :), b = 2:3);
julia> z.a
2-element view(::Array{Int64,2}, 2, :) with eltype Int64:
3
4
The labels of LArray and SLArray can be accessed
by function symbols, which returns a tuple of symbols.
Labelled slices
For a labelled array where the row and column slices are labeled, use @SLSlice
and @LSlice, similar to @SLArray and @LArray but passing a tuple of label
tuples.
For static arrays with labeled rows and columns:
ABC = @SLSliced (3,2) (:a,:b,:c), (:x, :y)
A = ABC([1 2; 3 4; 5 6])
A.a.x == 1
A[:c, :y] == 6
For regular arrays with labeled rows and columns:
A = @LSliced [1 2; 3 4; 5 6] (:a,:b,:c), (:x, :y)
A.a.x == 1
A[:c, :y] == 6
The labels of LSliced and SLScliced can be accessed
by function symbols.
For a two-dimensional LSliced or SLSliced, it returns a tuple
with first entry a tuple of row symbols and second entry a tuple of column symbols.
For higher-dimensional slices, it returns a Tuple-Type object with
parameters referring to the names of the dimensions.
A = @LSliced [1 2; 3 4; 5 6] (:a,:b,:c), (:x, :y)
symbols(A)[1] == (:a, :b, :c)
Example: Nice DiffEq Syntax Without A DSL
LabelledArrays.jl are a way to get DSL-like syntax without a macro. In this case, we can solve differential equations with labelled components by making use of labelled arrays, and always refer to the components by name instead of index.
Let's solve the Lorenz equation. Using @LVectors, we can do:
```julia using LabelledArrays, OrdinaryDiffEq
function lorenz_f(du,u,p,t) du.x = p.σ(u.y-u.x) du.y = u.x(p.ρ-u.z) - u.y du.z = u.xu.y - p.βu.z end
u0 = @LArray 1.0,0.0,0.0 p = @LArray 10.0, 28.0, 8/3 tspan = (0.0,10.0) prob = ODEProblem(lorenz_f,u0,tspan,p) sol = solve(prob,Tsit5())
Now the solution can be indexed as .x/y/z as well!
sol[10].x ```
We can also make use of @SLVector:
```julia LorenzVector = @SLVector (:x,:y,:z) LorenzParameterVector = @SLVector (:σ,:ρ,:β)
function f(u,p,t) x = p.σ(u.y-u.x) y = u.x(p.ρ-u.z) - u.y z = u.xu.y - p.βu.z LorenzVector(x,y,z) end
u0 = LorenzVector(1.0,0.0,0.0) p = LorenzParameterVector(10.0,28.0,8/3) tspan = (0.0,10.0) prob = ODEProblem(f,u0,tspan,p) sol = solve(prob,Tsit5()) ```
Relation to NamedTuples
Julia's Base has NamedTuples in v0.7+. They are constructed as:
julia
p = (σ = 10.0,ρ = 28.0,β = 8/3)
and they support p[1] and p.σ as well. The LVector, SLVector, LArray
and SLArray constructors also support named tuples as their arguments:
```julia julia> LVector((a=1, b=2)) 2-element LArray{Int64,1,(:a, :b)}: 1 2
julia> SLVector((a=1, b=2)) 2-element SLArray{Tuple{2},1,(:a, :b),Int64}: 1 2
julia> LArray((2,2), (a=1, b=2, c=3, d=4)) 2×2 LArray{Int64,2,(:a, :b, :c, :d)}: 1 3 2 4
julia> SLArray{Tuple{2,2}}((a=1, b=2, c=3, d=4)) 2×2 SLArray{Tuple{2,2},2,(:a, :b, :c, :d),Int64}: 1 3 2 4 ```
Converting to a named tuple from a labelled array x is available
using convert(NamedTuple, x). Furthermore, pairs(x)
creates an iterator that is functionally the same as
pairs(convert(NamedTuple, x)), yielding :label => x.label
for each label of the array.
There are some crucial differences between a labelled array and
a named tuple. Labelled arrays can have any dimensions while
named tuples are always 1D. A named tuple can have different types
on each element, while an SLArray can only have one element
type and furthermore it has the actions of a static vector.
As a result SLArray has less element type information, which
improves compilation speed while giving more vector functionality
than a NamedTuple. LArray also only has a single element type and,
unlike a named tuple, is mutable.
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Citation (CITATION.bib)
@article{DifferentialEquations.jl-2017,
author = {Rackauckas, Christopher and Nie, Qing},
doi = {10.5334/jors.151},
journal = {The Journal of Open Source Software},
keywords = {Applied Mathematics},
note = {Exported from https://app.dimensions.ai on 2019/05/05},
number = {1},
pages = {},
title = {DifferentialEquations.jl – A Performant and Feature-Rich Ecosystem for Solving Differential Equations in Julia},
url = {https://app.dimensions.ai/details/publication/pub.1085583166 and http://openresearchsoftware.metajnl.com/articles/10.5334/jors.151/galley/245/download/},
volume = {5},
year = {2017}
}