cbadasreml
A collection of helper functions for small-plot trial analysis using ASReml
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (10.5%) to scientific vocabulary
Repository
A collection of helper functions for small-plot trial analysis using ASReml
Basic Info
- Host: GitHub
- Owner: AAGI-AUS
- License: gpl-3.0
- Language: R
- Default Branch: main
- Homepage: https://aagi-aus.github.io/CBADASReml/
- Size: 1.94 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 6
- Releases: 0
Metadata Files
README.md
CBADASReml 
A collection of helper functions for small-plot trial analysis using ASReml
Installation instructions
{CBADASReml} is available through the R-Universe with pre-built binaries (this is the easy way).
To get started:
Enable this universe
r
options(repos = c(
aagi_aus = 'https://aagi-aus.r-universe.dev',
CRAN = 'https://cloud.r-project.org'))
Install
r
install.packages("CBADASReml")
The hard(er) way
You can install {CBADASReml} directly from the repository with {pak} like so:
```r o <- options() # store default options
options(pkg.build_vignettes = TRUE)
if (!require("pak")) install.packages("pak") pak::pak("AAGI-AUS/CBADASReml")
options(o) # reset options ```
Usage
For a detailed understanding of how the package can be used, here is a fully worked example of a small-plot trial analysis: Small-Plot Case Study This analysis tries to showcase each function in a useful capacity.
Contributions
All contributions are appreciated, but please make sure to follow the Contribution Guidelines.
Owner
- Name: Analytics for the Australian Grains Industry
- Login: AAGI-AUS
- Kind: organization
- Email: aagi@uq.edu.au
- Location: Australia
- Repositories: 2
- Profile: https://github.com/AAGI-AUS
CodeMeta (codemeta.json)
{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"identifier": "CBADASReml",
"description": "This package provides helper functions for ASReml, particularly for use with small-plot trials.",
"name": "CBADASReml: Provides helper functions for ASReml",
"codeRepository": "https://github.com/AAGI-AUS/CBADASReml",
"license": "https://spdx.org/licenses/GPL-3.0",
"version": "0.1.1",
"programmingLanguage": {
"@type": "ComputerLanguage",
"name": "R",
"url": "https://r-project.org"
},
"runtimePlatform": "R version 4.3.3 (2024-02-29)",
"author": [
{
"@type": "Person",
"givenName": "Kai",
"familyName": "Bagley",
"email": "kai.bagley@curtin.edu.au",
"@id": "https://orcid.org/0009-0004-6579-6959"
},
{
"@type": "Person",
"givenName": "Jordan",
"familyName": "Brown",
"email": "jordan.brown@curtin.edu.au",
"@id": "https://orcid.org/0009-0008-5014-0593"
},
{
"@type": "Person",
"givenName": "Matthew",
"familyName": "Nguyen",
"email": "matthew.nguyen@curtin.edu.au",
"@id": "https://orcid.org/0009-0006-6773-8263"
},
{
"@type": "Person",
"givenName": "Adam H.",
"familyName": "Sparks",
"email": "adam.sparks@curtin.edu.au",
"@id": "https://orcid.org/0000-0002-0061-8359"
}
],
"copyrightHolder": [
{
"@type": "Organization",
"name": "Curtin University"
},
{
"@type": "Organization",
"name": "Grains Research and Development Corporation"
}
],
"funder": [
{
"@type": "Organization",
"name": "Curtin University"
},
{
"@type": "Organization",
"name": "Grains Research and Development Corporation"
}
],
"maintainer": [
{
"@type": "Person",
"givenName": "Kai",
"familyName": "Bagley",
"email": "kai.bagley@curtin.edu.au",
"@id": "https://orcid.org/0009-0004-6579-6959"
}
],
"softwareSuggestions": [
{
"@type": "SoftwareApplication",
"identifier": "asreml",
"name": "asreml"
},
{
"@type": "SoftwareApplication",
"identifier": "car",
"name": "car",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=car"
},
{
"@type": "SoftwareApplication",
"identifier": "emmeans",
"name": "emmeans",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=emmeans"
},
{
"@type": "SoftwareApplication",
"identifier": "glmmTMB",
"name": "glmmTMB",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=glmmTMB"
},
{
"@type": "SoftwareApplication",
"identifier": "knitr",
"name": "knitr",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=knitr"
},
{
"@type": "SoftwareApplication",
"identifier": "rmarkdown",
"name": "rmarkdown",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=rmarkdown"
},
{
"@type": "SoftwareApplication",
"identifier": "roxyglobals",
"name": "roxyglobals",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=roxyglobals"
},
{
"@type": "SoftwareApplication",
"identifier": "rstac",
"name": "rstac",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=rstac"
},
{
"@type": "SoftwareApplication",
"identifier": "testthat",
"name": "testthat",
"version": ">= 3.0.0",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=testthat"
},
{
"@type": "SoftwareApplication",
"identifier": "vdiffr",
"name": "vdiffr",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=vdiffr"
},
{
"@type": "SoftwareApplication",
"identifier": "cli",
"name": "cli",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=cli"
}
],
"softwareRequirements": {
"1": {
"@type": "SoftwareApplication",
"identifier": "R",
"name": "R",
"version": ">= 4.1.0"
},
"2": {
"@type": "SoftwareApplication",
"identifier": "asremlPlus",
"name": "asremlPlus",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=asremlPlus"
},
"3": {
"@type": "SoftwareApplication",
"identifier": "ggplot2",
"name": "ggplot2",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=ggplot2"
},
"4": {
"@type": "SoftwareApplication",
"identifier": "gstat",
"name": "gstat",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=gstat"
},
"5": {
"@type": "SoftwareApplication",
"identifier": "sf",
"name": "sf",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=sf"
},
"SystemRequirements": null
},
"applicationCategory": "Tools",
"isPartOf": "https://grdc.com.au/research/partnerships-and-initiatives/strategic-partnerships/aagi",
"keywords": [
"AgriculturalResearch",
"ExperimentalAnalysis"
],
"fileSize": "274.077KB",
"relatedLink": "https://aagi-aus.github.io/CBADASReml/",
"readme": "https://github.com/AAGI-AUS/CBADASReml/blob/main/README.md"
}
GitHub Events
Total
- Issues event: 3
- Watch event: 1
- Push event: 22
- Create event: 1
Last Year
- Issues event: 3
- Watch event: 1
- Push event: 22
- Create event: 1
Dependencies
- asremlPlus * imports
- ggplot2 * imports
- gstat * imports
- sf * imports
- asreml * suggests
- car * suggests
- emmeans * suggests
- glmmTMB * suggests
- knitr * suggests
- rmarkdown * suggests
- roxyglobals * suggests
- rstac * suggests
- testthat >= 3.0.0 suggests
- vdiffr * suggests