{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import psycopg2\n",
    "from tqdm.auto import tqdm\n",
    "from typing import Dict\n",
    "\n",
    "import numpy as np\n",
    "import pandas as pd\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "conn = psycopg2.connect(\"dbname=patents user=martin host=localhost password=F0hn1lcob.r\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "cur = conn.cursor('citation_download')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cur.execute(\"SELECT patent_id, edges FROM citation_adj where patent_id in (select patent_id from patents where country_code in ('US', 'EP', 'JP'));\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "with open(\"/var/patentmark/citation_edges_eu_jp_us.txt\", \"w\") as outfile:\n",
    "    for row in tqdm(cur):\n",
    "        outfile.write(str(row[0])) \n",
    "        outfile.write(\" \")\n",
    "        outfile.write(' '.join(map(str, row[1])))\n",
    "        outfile.write(\"\\n\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.jupyter.widget-view+json": {
       "model_id": "5a7dfa818bc9432b905386267b80a88a",
       "version_major": 2,
       "version_minor": 0
      },
      "text/plain": [
       "HBox(children=(FloatProgress(value=1.0, bar_style='info', layout=Layout(width='20px'), max=1.0), HTML(value=''…"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n"
     ]
    }
   ],
   "source": [
    "cur.execute(\"select patent_id, publication_number from patents;\")\n",
    "with open(\"/var/patentmark/citation_mapping.csv\", \"w\") as outfile:\n",
    "    for row in tqdm(cur):\n",
    "        outfile.write(str(row[0]))\n",
    "        outfile.write(\",\")\n",
    "        outfile.write(row[1])\n",
    "        outfile.write(\"\\n\")\n",
    "        "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "np_embeddings = np.fromfile(\"/var/patentmark/citations.verse.32d\", dtype=np.float32)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "id_lookup = pd.read_csv(\"/var/patentmark/citation_mapping.csv\", header=None)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "id_lookup.columns = [\"patent_id\", \"publication_number\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "id_lookup.set_index(\"patent_id\", inplace=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "id_lookup"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "np_embeddings = np_embeddings.reshape(-1,32)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embedding_frame = pd.DataFrame(np_embeddings).apply(np.array, axis=1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embedding_frame.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embedding_frame.columns = [\"citation_based_embedding\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embeddings = embedding_frame.to_frame().join(id_lookup, how=\"inner\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embeddings.set_index(\"publication_number\", inplace=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embeddings.columns=[\"citation_based_embedding\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embeddings"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "embeddings.to_parquet(\"citation_embeddings.parquet\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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