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eqtlbma

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

https://github.com/timflutre/eqtlbma

Science Score: 18.0%

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Keywords

c-plus-plus qtl
Last synced: 6 months ago · JSON representation ·

Repository

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

Basic Info
Statistics
  • Stars: 21
  • Watchers: 8
  • Forks: 12
  • Open Issues: 2
  • Releases: 0
Topics
c-plus-plus qtl
Created about 13 years ago · Last pushed almost 8 years ago
Metadata Files
Readme Changelog License Citation

README 

eQtlBma - eQTL by Bayesian Model Averaging
==========================================

This directory contains eQtlBma, a package implementing Bayesian methods
to detect expression quantitative trait loci (eQTL).

This package is free software, you can redistribute it and/or modify it 
under the terms of the GNU General Public License (GPL-3).

The GNU General Public License does not permit this software to be
redistributed in proprietary programs.

This library is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

The code is hosted online, https://github.com/timflutre/eqtlbma, where you 
can report issues: https://github.com/timflutre/eqtlbma/issues. A useful 
first entry point is here: https://github.com/timflutre/eqtlbma/wiki.


Installation
============

The package follows the standard GNU installation procedure. Please consult
the INSTALL file in this distribution for more instructions.

For the impatients:
    ./configure
    make
    make check
    sudo make install


Documentation
=============

To generate the manual in the doc/ directory, type:
    make pdf
or
    make html

See the NEWS file for recent changes to the package, and ask questions on
the mailing list: https://groups.google.com/forum/#!forum/eqtlbma-users.

Owner

  • Name: Timothée Flutre
  • Login: timflutre
  • Kind: user
  • Location: Paris-Saclay, France
  • Company: INRAE, BAP, GQE, DEAP

Research scientist in the lab "Quantitative Genetics and Evolution" (GQE)

Citation (CITATION) 

To cite eQtlBma in publications, please use:

Flutre, T., Wen, X., Pritchard, J. & Stephens, M. A statistical framework for joint eQTL analysis in multiple tissues. PLoS Genetics 9, e1003486+ (2013).

A BibTeX entry for LaTeX users is:

@article{flutre2013eqtlbma,
    author = {Flutre, Timoth\'{e}e and Wen, Xiaoquan and Pritchard, Jonathan and Stephens, Matthew},
    title = {A Statistical Framework for Joint {eQTL} Analysis in Multiple Tissues},
    journal = {PLoS Genetics},
    volume = {9},
    year = {2013},
    publisher = {Public Library of Science},
    doi = {10.1371/journal.pgen.1003486}
}

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