bionet

Github repository for BioNet package from bioconductor to add to shinyapps.io

https://github.com/tjmkuijpers/bionet

Science Score: 18.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
  • Academic links in README
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (0.9%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Github repository for BioNet package from bioconductor to add to shinyapps.io

Basic Info
  • Host: GitHub
  • Owner: TJMKuijpers
  • Language: HTML
  • Default Branch: master
  • Homepage:
  • Size: 1.3 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 7 years ago · Last pushed over 7 years ago
Metadata Files
Citation

Owner

  • Name: Tim Kuijpers
  • Login: TJMKuijpers
  • Kind: user
  • Location: Eindhoven
  • Company: The Hyve

Citation (CITATION)

citHeader("To cite BioNet in publications use one of these references:")

citEntry(entry = "Article",
  author = "Daniela Beisser and Gunnar W. Klau and Thomas Dandekar and Tobias Mueller and Marcus Dittrich",
  title = "BioNet: an R-package for the Functional Analysis of Biological Networks",
  journal = "Bioinformatics",
  year = "2010",
  volume = "26",
  pages = "1129-1130",
  number = "8",
  textVersion = "Beisser, D.; Klau, G. W.; Dandekar, T.; Mueller, T. and Dittrich, M. (2009). BioNet an R-package for the Functional Analysis of Biological Networks. Bioinformatics 26, 1129-1130."
)

citEntry(entry = "Article",
  author = "Marcus T Dittrich and Gunnar W Klau and Andreas Rosenwald and Thomas
	Dandekar and Tobias Mueller",
  title = "Identifying functional modules in protein-protein interaction networks:
	an integrated exact approach",
  journal = "Bioinformatics",
  year = "2008",
  volume = "24",
  pages = "i223--i231",
  number = "13",
  textVersion = "Dittrich, M. T.; Klau, G. W.; Rosenwald, A.; Dandekar, T. and Mueller, T. (2008). Identifying functional modules in protein-protein interaction networks: an integrated exact approach. Bioinformatics 24, i223-i231."
)

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Dependencies

DESCRIPTION cran
  • R >= 2.10.0 depends
  • RBGL * depends
  • graph * depends
  • AnnotationDbi * imports
  • Biobase * imports
  • igraph >= 1.0.1 imports
  • ALL * suggests
  • DLBCL * suggests
  • XML * suggests
  • genefilter * suggests
  • hgu95av2.db * suggests
  • impute * suggests
  • limma * suggests
  • rgl * suggests
  • xtable * suggests