Data

Tools

Indexes

Applications

Experiments

Open Source Science

biocatalogue

This is the canonical BioCatalogue repository.

https://github.com/mygrid/biocatalogue

Science Score: 28.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    7 of 15 committers (46.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.0%) to scientific vocabulary
Last synced: 11 months ago · JSON representation ·

Repository

This is the canonical BioCatalogue repository.

Basic Info
  • Host: GitHub
  • Owner: myGrid
  • License: other
  • Language: Ruby
  • Default Branch: master
  • Homepage: www.biocatalogue.org
  • Size: 61.2 MB
Statistics
  • Stars: 4
  • Watchers: 14
  • Forks: 5
  • Open Issues: 3
  • Releases: 0
Created almost 15 years ago · Last pushed over 3 years ago
Metadata Files
Readme License Citation

README 

== BioCatalogue

The BioCatalogue is a Web application that provides a registry of Web services. It
has been originally designed as a registry of biological services but in reality
it is domain-independent and can be used for registering SOAP and REST services
from any domain.

The goals of the BioCatalogue are:

- Provide a single registration point for Web service providers and a single search
site for scientists and developers.
- Provide a curated catalogue of Web services.
- Providers, expert curators and users can provide oversight, monitor the catalogue
and provide high quality annotations for services.
- Provide a place where the community can find, contact and meet the experts and
maintainers of these services.

The BioCatalogue was a BBSRC-funded project and has been running since 1st June 2008.
The project was a joint venture between the University of Manchester (led by Carole Goble)
and the EMBL-EBI (led by Rodrigo Lopez).

The service is still running at http://www.biocatalogue.org and is maintained by the
University of Manchester.

You can read more about the project at https://www.biocatalogue.org/wiki/.

You can stand up your own instance of BioCatalogue by following the installation instructions at:
http://dev.mygrid.org.uk/wiki/display/servicecatalographer/Installation+Instructions+-+Production
http://dev.mygrid.org.uk/wiki/display/servicecatalographer/Installation+Instructions+-+Development

Owner

  • Name: myGrid
  • Login: myGrid
  • Kind: organization
  • Email: support@mygrid.org.uk
  • Location: Manchester, UK

Citation (CITATION) 

To cite BioCatalogue in you publication please use:

Bhagat, J., Tanoh, F., Nzuobontane, E., Laurent, T., Orlowski, J., Roos, M., Wolstencroft, K., Aleksejevs, S., Stevens, R., Pettifer, S., Lopez, R., Goble, C.A.: BioCatalogue: a universal catalogue of web services for the life sciences, Nucl. Acids Res., 2010. doi:10.1093/nar/gkq394

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 2,597
  • Total Committers: 15
  • Avg Commits per committer: 173.133
  • Development Distribution Score (DDS): 0.547
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
jits j****s@1****0 1,177
Niall Beard n****d@g****m 414
anenadic a****c@c****k 355
ebontane e****e@1****0 291
tlaurent t****t@1****0 130
mannie m****e@1****0 128
rhaines r****s@1****0 44
Robert Haines r****s@m****k 29
Finn Bacall f****l@c****k 15
Aleksandra Nenadic a****c@m****k 7
fbacall f****l@1****0 3
Finn Bacall f****l@m****k 1
Aleksandra Nenadic a****x@l****k 1
Finn Bacall f****l 1
Aleksandra Nenadic a****c@m****k 1
Committer Domains (Top 20 + Academic)
manchester.ac.uk: 4 cs.man.ac.uk: 2 lect-1-1.cs.man.ac.uk: 1

Dependencies

Gemfile rubygems
  • coffee-rails ~> 3.2.1 development
  • shoulda < 3.2.0 development
  • uglifier >= 1.0.3 development
  • acts_as_trashable >= 0
  • addressable >= 0
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  • crack >= 0
  • daemons >= 0
  • dalli >= 0
  • delayed_job_active_record >= 0
  • dnsruby >= 0
  • exception_notification < 4.0.0
  • factory_girl <= 2.6.5
  • factory_girl_rails < 4.0
  • geokit >= 0
  • google-analytics-rails >= 0
  • haml >= 0
  • hashie >= 0
  • httparty >= 0
  • json >= 0
  • libxml-ruby = 2.6.0
  • mail >= 0
  • markaby >= 0
  • maruku >= 0
  • mash >= 0
  • memcache-client >= 0
  • mumboe-soap4r >= 0
  • my_annotations >= 0
  • mysql2 >= 0
  • nokogiri ~> 1.5.10
  • oauth-plugin >= 0
  • paperclip ~> 4.1
  • progress_bar >= 0
  • prototype-rails >= 0
  • rails ~> 3.2.14
  • rails_autolink >= 0
  • rake >= 0
  • rdoc ~> 3.4
  • redbox >= 0
  • rjb ~> 1.4.9
  • rpx_now >= 0
  • ruby-hmac >= 0
  • rubyzip >= 0
  • sass-rails ~> 3.2.3
  • seer >= 0
  • solr-ruby >= 0
  • sunspot_rails >= 0
  • sunspot_solr >= 0
  • tabs_on_rails >= 0
  • thin >= 0
  • twitter >= 0
  • tzinfo >= 0
  • validates_email_format_of >= 0
  • validates_existence >= 0
  • version_info = 0.7.1
  • white_list >= 0
  • will_paginate >= 0
Gemfile.lock rubygems
  • 117 dependencies