Recent Releases of zarp
zarp - v1.0.0
What's Changed
Exciting New Features 🎉
- docs: add extensive externally hosted docs by @fgypas in https://github.com/zavolanlab/zarp/pull/177 ### Other Changes
- docs: deploy dedicated docs pages by @uniqueg in https://github.com/zavolanlab/zarp/pull/175
- docs: add ZARP poster to info materials by @ninsch3000 in https://github.com/zavolanlab/zarp/pull/176
- build: major dependencies update by @uniqueg in https://github.com/zavolanlab/zarp/pull/181
- build: add Dockerfile by @uniqueg in https://github.com/zavolanlab/zarp/pull/188
- ci: allow workflow to force push CHANGELOG by @uniqueg in https://github.com/zavolanlab/zarp/pull/189
Full Changelog: https://github.com/zavolanlab/zarp/compare/v0.5.0...v1.0.0
- Python
Published by github-actions[bot] about 1 year ago
zarp - v1.0.0-rc.1
What's Changed
Exciting New Features 🎉
- feat: mount tmp dir in Singularity container by @ninsch3000 in https://github.com/zavolanlab/zarp/pull/139
- feat: multiorganism support by @mkatsanto in https://github.com/zavolanlab/zarp/pull/172 ### Other Changes
- fix: DRR/ERR IDs not supported in SRA workflow by @uniqueg in https://github.com/zavolanlab/zarp/pull/131
- fix: do not use nan in htsinfer call by @ninsch3000 in https://github.com/zavolanlab/zarp/pull/137
- fix: allow global error flag variable to be changed inside function by @ninsch3000 in https://github.com/zavolanlab/zarp/pull/138
- perf: pin htsinfer docker image to latest by @balajtimate in https://github.com/zavolanlab/zarp/pull/140
- doc: DOI badges for biorxiv, zenodo, workflowhub by @ninsch3000 in https://github.com/zavolanlab/zarp/pull/141
- ci: fix ZARP Conda environment persistence by @dominikburri in https://github.com/zavolanlab/zarp/pull/142
- fix: update htsinfertotsv.py with zarp-cli compatibilities by @balajtimate in https://github.com/zavolanlab/zarp/pull/143
- fix: change htsinfertotsv.py exit code by @balajtimate in https://github.com/zavolanlab/zarp/pull/144
- feat(htsinfer): interface log and cluster log dirs via config.yaml by @ninsch3000 in https://github.com/zavolanlab/zarp/pull/146
- fix(ci): fix failing jobs, add htsinfer job by @ninsch3000 in https://github.com/zavolanlab/zarp/pull/149
- fix: pin Python version by @balajtimate in https://github.com/zavolanlab/zarp/pull/151
- fix: Cutadapt compression level problem by @uniqueg in https://github.com/zavolanlab/zarp/pull/153
- build: upgrade tool versions by @uniqueg in https://github.com/zavolanlab/zarp/pull/155
- docs: fix field names in sample table example by @magmir71 in https://github.com/zavolanlab/zarp/pull/134
- fix: major rewrite of SRA download workflow by @mkatsanto in https://github.com/zavolanlab/zarp/pull/157
- fix: too little RAM allocated for BED sorting by @uniqueg in https://github.com/zavolanlab/zarp/pull/161
- ci: upgrade used Actions by @uniqueg in https://github.com/zavolanlab/zarp/pull/163
- chore: deprecation warnings for get_sample() by @uniqueg in https://github.com/zavolanlab/zarp/pull/164
- fix(sra): make layout extraction more resilient by @uniqueg in https://github.com/zavolanlab/zarp/pull/167
- fix(sra): improve layout extraction from NCBI db by @mkatsanto in https://github.com/zavolanlab/zarp/pull/168
- feat(htsinfer): support Conda execution by @uniqueg in https://github.com/zavolanlab/zarp/pull/169
- docs: update ZARP-cli installation instructions by @uniqueg in https://github.com/zavolanlab/zarp/pull/170
New Contributors
- @uniqueg made their first contribution in https://github.com/zavolanlab/zarp/pull/131
- @magmir71 made their first contribution in https://github.com/zavolanlab/zarp/pull/134
Full Changelog: https://github.com/zavolanlab/zarp/compare/v0.5.0...v1.0.0-rc.1
- Python
Published by uniqueg over 2 years ago
zarp - v0.5.0
:sparkles: New Features
90f6f9a- add changelog and release notes (PR #87 by @mkatsanto)- :arrowlowerright: addresses issue #5 opened by @uniqueg
4b52d4d- zarp-cli installation as an option (PR #122 by @mkatsanto)- :arrowlowerright: addresses issue #114 opened by @uniqueg
:bug: Bug Fixes
2f08e8c- issue with snakefmt, issue with mamba version in CI (PR #111 by @fgypas)- :arrowlowerright: fixes issue #109 opened by @fgypas
0cc8e86- gtf sorting (PR #121 by @mkatsanto)- :arrowlowerright: fixes issue #113 opened by @mkatsanto
1a57ffb- update environment dependency versions (PR #124 by @balajtimate)- :arrowlowerright: fixes issue #108 opened by @fgypas
72b7354- release notes categories (PR #128 by @mkatsanto)- :arrowlowerright: fixes issue #127 opened by @mkatsanto
- Python
Published by mkatsanto over 3 years ago
zarp - v0.4.0
What's Changed
Exciting New Features 🎉
- chore: update Snakemake by @AngryMaciek in https://github.com/zavolanlab/zarp/pull/50
- chore: change conda pkg manager to mamba by @AngryMaciek in https://github.com/zavolanlab/zarp/pull/53
- chore: turn MultiQC logo config params optional by @AngryMaciek in https://github.com/zavolanlab/zarp/pull/74 ### Other Changes
- build: clean up dependencies by @mkatsanto in https://github.com/zavolanlab/zarp/pull/73
New Contributors
- @ninsch3000 made their first contribution in https://github.com/zavolanlab/zarp/pull/61
- @noepozzan made their first contribution in https://github.com/zavolanlab/zarp/pull/62
- @dominikburri made their first contribution in https://github.com/zavolanlab/zarp/pull/64
- @nielsschlusser made their first contribution in https://github.com/zavolanlab/zarp/pull/96
- Python
Published by mkatsanto over 3 years ago