intermittentstreamdynamics_2024
https://github.com/elviradbastiani/intermittentstreamdynamics_2024
Science Score: 31.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: elviradbastiani
- License: other
- Default Branch: Analysis-and-results
- Size: 201 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Influence of intermittent stream dynamics on predator-prey interactions
Authors
- Milena Gonçalves-Silva (1)
- Elvira D’Bastiani (2)
- Thibault Datry (3)
- Carla Ferreira Rezende (1)
Institutions
- (1) Programa de Pós-Graduação em Ecologia e Recursos Naturais, Universidade Federal do Ceará, Brasil.
- (2) Department of Ecology and Evolutionary Biology, University of California, Los Angeles, USA.
- (3) INRAE, UR RiverLy, Centre de Lyon-Villeurbanne, Villeurbanne, France.
**Corresponding author*: Milena Gonçalves-Silva, e-mail: milenagoncalves.bio@gmail.com
ORCIDs: - Milena Gonçalves-Silva: https://orcid.org/0000-0003-1626-1216 - Elvira D’Bastiani: https://orcid.org/0000-0002-8615-2763 - Thibault Datry: https://orcid.org/0000-0003-1390-6736 - Carla Ferreira Rezende: https://orcid.org/0000-0002-2319-6558
Running headline: Effect of hydrological phases on interactions
Abstract
Intermittent rivers and ephemeral streams are dynamic ecosystems with periodic interruptions in flow, leading to temporary or complete absence of water. Such dynamics (flowing to dry phases) create a mosaic of isolated pools, which can decrease habitat volume and connectivity. In addition to reduced resource availability and increased predation levels, the drying dynamics impacts both food webs and their connectivity. In this study we asked: (i) Do species composition and environmental variables change during the hydrological phases in intermittent streams? (ii) Do hydrological phases in intermittent streams affect predator-prey network structures? (iii) Do stochastic factors during the dry phase affect predator-prey network structures? We infer predator-prey interactions using fish food items along of 1km of the intermittent river Tabocas during flowing (23 sections) and dry phases (22 isolated pools). We identified 18 predator species and 11 ecological categories of food items. We found that species composition and environmental variables change during the flowing and dry phases (semi-arid conditions) in intermittent streams. Despite similar species richness between phases, significant differences in species composition highlight the importance of considering temporal fluctuations in understanding community dynamics. Moreover, our findings demonstrate that hydrological fluctuations affect predator-prey network structures. Specifically, during the flowing phase, we noted a nested pattern in interaction networks, while during the dry phase, the networks within isolated pools displayed different patterns, including nested and/or modular pattern, high specialisation, and random structures. Our findings also highlight that stochastic factors can operate during the dry phase, leading to the formation of isolated pools and the creating predator-prey network with random structures. The key factor contributing to the emergence of random networks is the reduction in the number of predator-prey links and the increased specialisation within the pools. Given the limited number of these links of most sampled pools, fish species become more vulnerable. This highlights the importance of identifying priority aquatic refuges to sustain freshwater biodiversity in intermittent streams. Our study highlights the importance of considering hydrological variability and considering stochastic factors in devising strategies to conserve biodiversity and minimize the impact of climate change on the biota of tropical semi-arid ecosystems.
Keywords
climate changes, drying rivers networks, temporary streams, semi-arid climate.
NAMING
Data and codes (Branch)
File 1. README.txt
Folder: (i) Do species composition and environmental variables change during the hydrological phases in intermittent streams? Folder: Betadiversity File 1. script.r File 2. databetas.csv File 3. fishabundancedry.csv
Folder: Mantel test
File 1. script.r
File 2. abund.csv
File 3. amb.csv
File 4. dist.csv
File 5. ext.csv
Folder: NMDS
File 1. script.r
File 2. fishabundance.csv
Folder: PCA
File 1. script.r
File 3. data.csv
Folder: Pearson correlation
File 1. script.r
File 2. met.csv
File 3. amb.csv
Folder: FO
File 1. script.r
File 2. H2_ord.csv
File 3. NM FO.csv
File 4. dry.csv
File 5. flowing.csv
File 6. module FO.csv
File 7. nested FO.csv
File 8. random FO.csv
Folder: GLM
File 1. script.r
File 2. interactions_pools.csv
Folder: (ii) Do hydrological phases in intermittent streams affect predator-prey network structures? (iii) Do stochastic factors during the dry phase affect predator-prey network structures? File 1. script.r File 2. fooditems_flowing.csv
File 3. P1.csv
File 4. P2.csv
File 5. P3.csv
File 6. P4.csv
File 7. P5.csv
File 8. P6.csv
File 9. P7.csv
File 10. P8.csv
File 11. P9.csv
File 12. P10.csv
File 13. P11.csv
File 14. P12.csv
File 15. P13.csv
File 16. P14.csv
File 17. P15.csv
File 18. P16.csv
File 19. P17.csv
File 20. P18.csv
File 21. P19.csv
File 22. P20.csv
File 23. P21.csv
File 24. P22.csv
File formats: i. Databases: .csv, ii. Scripts: .r
Units of measurement: i. m = meters
Software:
i. R version 4.3.1 (R Core Team, 2013)
Citation: Gonçalves-Silva, M., D’Bastiani, E., Datry, T., & Rezende, C. F. (Year). Influence of intermittent stream dynamics on predator-prey interactions. Journal of [Journal Name], [Year], [Volume(Issue)], [Page Range]. DOI: [DOI Number].
Owner
- Name: Elvira D'Bastiani
- Login: elviradbastiani
- Kind: user
- Location: Los Angeles, Califórnia, EUA
- Company: University of California
- Website: https://elviradbastiani.wixsite.com/ecoevo
- Twitter: elviradbastiani
- Repositories: 3
- Profile: https://github.com/elviradbastiani
Postdoc at Pinter-Wollman Lab - University of California, Los Angeles
Citation (CITATION)
Gonçalves-Silva, M., D’Bastiani, E., Datry, T., & Rezende, C. F. (Year). Influence of intermittent stream dynamics on predator-prey interactions. Journal of [Journal Name], [Year], [Volume(Issue)], [Page Range]. DOI: [DOI Number].
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 3
- Average time to close issues: N/A
- Average time to close pull requests: 17 days
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- elviradbastiani (3)