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tr2path

Mechanism-centric regulatory network identifies NME2 and MYC programs as markers of Enzalutamide resistance in CRPC

https://github.com/mitrofanova-lab/tr2path

Science Score: 18.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.1%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Mechanism-centric regulatory network identifies NME2 and MYC programs as markers of Enzalutamide resistance in CRPC

Basic Info
  • Host: GitHub
  • Owner: mitrofanova-lab
  • License: other
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 13.4 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 3
Created over 2 years ago · Last pushed about 2 years ago
Metadata Files
Readme License Citation

README.md

TR2PATH

Mechanism-centric regulatory network identifies NME2 and MYC programs as markers of Enzalutamide resistance in CRPC

usage

pre built versions

You can directly download the prebuilt versions of the package from the relase and follow the instructions in the manual below

Usage Manual

build it locally on your machine

  1. clone the repositry

  2. Download the FinalWeightedRegNetwork.rda and it to the data folder in the code.

Note:Due to the large size of the file , we have included it as part of the realease

  1. Build the package R CMD build

  2. Follow the instructions in the manual for usage Usage Manual

Owner

  • Login: mitrofanova-lab
  • Kind: user

Citation (CITATION) 

citHeader("Please, cite the following reference:")

citEntry(entry="article",
	author = c(person("Sukanya","Panja"),
	           person(c("Mihai","Ioan"),"Truica"),
	           person("Christina","Yu"),
	           person("Vamshi", "Saggurthi"),
	           person(c("Michael","W"),"Craige"),
	           person("Katie","Whitehead"),
	           person(c("Mayra","V"), "Tuiche"),
		   person("Aymen","Al-Saadi"),
		   person("Riddhi","Vyas"),
		   person("Shridar","Ganesan"),
		   person("Suril","Gohel"),
		   person("Frederick","Coffman"),
		   person(c("James","S"),"Parrott),
		   person("Songhua","Quan"),
		   person("Shantenu","Jha"),
		   person("Issac","Kim"),
		   person("Edward","Schaeffer"),
		   person("Vishal","Kothari"),
		   person("Sarki","Abdulkadir"),
		   person("Antonina", "Mitrofanova")),
	title = "Mechanism-centric regulatory network identifies NME2 and MYC programs as markers of Enzalutamide resistance in CRPC",

	textVersion = 
	"Panja, S., Truica,M.I., Yu, C., Saggurthi, V., Craige, M.W., Whitehead, K., et al. Mechanism-centric regulatory network identifies NME2 and MYC programs as markers of Enzalutamide resistance in CRPC."
)

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Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • Rcpp * imports
  • doParallel * imports
  • dplyr * imports
  • foreach * imports
  • parallel * imports
  • psych * imports
  • rCAT * imports
  • reshape2 * imports
  • stats * imports
  • utils * imports
  • viper * imports
  • BiocStyle * suggests
  • knitr * suggests
  • testthat >= 3.0.0 suggests