338-neuron-segmentation-using-3d-wavelet-integrated-encoder-decoder-network
Science Score: 41.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
○codemeta.json file
-
○.zenodo.json file
-
✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: arxiv.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Last synced: 7 months ago
·
JSON representation
·
Repository
Basic Info
- Host: GitHub
- Owner: SZU-AdvTech-2023
- Language: Python
- Default Branch: main
- Size: 904 KB
Statistics
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 0
Created about 2 years ago
· Last pushed about 2 years ago
Metadata Files
Citation
https://github.com/SZU-AdvTech-2023/338-Neuron-Segmentation-Using-3D-Wavelet-Integrated-Encoder-Decoder-Network/blob/main/
# 3D-WaveUNet [[paper]](https://arxiv.org/abs/2106.00259.pdf)
## (0) Neuron Sewgmentation using 3D Wavelet Integrated Encoder-Decoder Network
## (1) Training 3D WaveUNet on NeuCuDa
main.py
## (2) The dataset: NeuCuDa
NeuCuDa is on the website https://pan.baidu.com/s/1CvsI4OvXkfNu0m-Bfk_yQQ (passwords: jdqe)
## (3) The trained weight files
will be released
## (4) Segmenting 3D neuronal images
main_denoise.py
## (5) Tracing segmented neuronal images and evaluting the reconstructions
main_compare.py
## (6) The paper
If the code or method help you in the research, please cite the following paper:
```
@article{li2021neuron,
title={Neuron segmentation using 3D wavelet integrated encoder-decoder network},
author={Li, Qiufu and Shen, Linlin},
journal={Bioinformatics},
year={2021},
doi={https://doi.org/10.1093/bioinformatics/btab716}
}
```
Owner
- Name: SZU-AdvTech-2023
- Login: SZU-AdvTech-2023
- Kind: organization
- Repositories: 1
- Profile: https://github.com/SZU-AdvTech-2023
Citation (citation.txt)
@article{REPO338,
author = "Li, Qiufu and Shen, Linlin",
journal = "Bioinformatics",
number = "3",
pages = "809--817",
publisher = "Oxford University Press",
title = "{Neuron Segmentation Using 3D Wavelet Integrated Encoder-Decoder Network}",
volume = "38",
year = "2022"
}