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Recent Releases of mtbseq-nf

mtbseq-nf - v0.9.9: Finishing touches for the publication

What's Changed

  • Add multiqc report by @Mxrcon in https://github.com/mycobactopia-org/MTBseq-nf/pull/87
  • Add library parameter to samplesheet by @Mxrcon in https://github.com/mycobactopia-org/MTBseq-nf/pull/88

Full Changelog: https://github.com/mycobactopia-org/MTBseq-nf/compare/v0.9.8...v0.9.9

- Nextflow
Published by abhi18av over 1 year ago

mtbseq-nf - v0.9.8: Transition to nf-core template

What's Changed

  • Use nf-core template for the pipeline to facilitate standardisation by @abhi18av in https://github.com/mycobactopia-org/MTBseq-nf/pull/84
  • [PATCH] Using biocontainers and removing custom container version by @Mxrcon in https://github.com/mycobactopia-org/MTBseq-nf/pull/85
  • Modifications after extensively iterations on Virtual Machine by @Mxrcon in https://github.com/mycobactopia-org/MTBseq-nf/pull/86

Full Changelog: https://github.com/mycobactopia-org/MTBseq-nf/compare/v0.9.7...v0.9.8

- Nextflow
Published by abhi18av over 1 year ago

mtbseq-nf - v0.9.7: Test release for clusters

What's Changed

  • Bundle the gatk jar in the container by @abhi18av in https://github.com/mtb-bioinformatics/MTBseq-nf/pull/75

Full Changelog: https://github.com/mtb-bioinformatics/MTBseq-nf/compare/v0.9.6...v0.9.7

- Nextflow
Published by abhi18av about 3 years ago

mtbseq-nf - v0.9.6: Inching towards v1.0

Full Changelog: https://github.com/mtb-bioinformatics/MTBseq-nf/compare/v0.9.5...v0.9.6

- Nextflow
Published by abhi18av over 3 years ago

mtbseq-nf - v0.9.5: Redesign the UX for the pipeline

What's Changed

  • Updating the documentation for MEDTROP presentation by @Mxrcon in https://github.com/mtb-bioinformatics/MTBseq-nf/pull/73
  • Improvements to the design and defaults by @abhi18av in https://github.com/mtb-bioinformatics/MTBseq-nf/pull/74

Full Changelog: https://github.com/mtb-bioinformatics/MTBseq-nf/compare/v0.9.4...v0.9.5

- Nextflow
Published by abhi18av over 3 years ago

mtbseq-nf - Fix QC flow

What's Changed

  • [Fix] Preventing workflows from caching the samples.tsv for cohort steps by @Mxrcon in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/66
  • [FIX] Found errors in qc after debbuging by @Mxrcon in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/69

Full Changelog: https://github.com/mtb-bioinformatics/mtbseq-nf/compare/v0.9.3...v0.9.4

- Nextflow
Published by abhi18av almost 4 years ago

mtbseq-nf - v0.9.3: Testing done on cloud/server/cluster

What's Changed

  • Add reference files for MTB by @emilyncosta in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/49
  • [DEV] Adding a channel for references by @Mxrcon in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/48
  • Release 0.9.3 by @emilyncosta in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/50
  • [DEV ] Adding a qc report report workflow by @Mxrcon in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/56
  • [MAINTENANCE] Adding a test workflow and updating the Makefile by @Mxrcon in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/61
  • [FIX] Adding specific tag to conda recipe by @Mxrcon in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/64

New Contributors

  • @emilyncosta made their first contribution in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/49

Full Changelog: https://github.com/mtb-bioinformatics/mtbseq-nf/compare/v0.9.2...v0.9.3

- Nextflow
Published by abhi18av almost 4 years ago

mtbseq-nf - Global config file for all mtbseqs and nextflow params

- Nextflow
Published by abhi18av over 4 years ago

mtbseq-nf - Functional code and DAGs

- Nextflow
Published by abhi18av over 4 years ago