Recent Releases of ish
ish - v1.3.0
What's Changed
Major updates:
- Convert semi-global from using unsigned ints to signed ints @sstadick in https://github.com/BioRadOpenSource/ish/pull/55
- Increase batch-size to full human ~4.5G
- Allows specifying simd width at compile time.
- Updates the bench aligner.
- Correctly skip second alignment to find start pos based off of score cutoff instead of query length.
Full Changelog: https://github.com/BioRadOpenSource/ish/compare/v1.2.1...v1.3.0
- Mojo
Published by sstadick 8 months ago
ish - v1.2.0
What's Changed
- fix: replace saturating add and sub with llvm intrinsics by @sstadick in https://github.com/BioRadOpenSource/ish/pull/48
- feat: add test case for issue 50 by @sstadick in https://github.com/BioRadOpenSource/ish/pull/51
- chore: update for mojo 25.4 by @sstadick in https://github.com/BioRadOpenSource/ish/pull/49
Full Changelog: https://github.com/BioRadOpenSource/ish/compare/v1.1.1...v1.2.0
- Mojo
Published by sstadick 8 months ago
ish - v1.1.1
What's Changed
- chore: updates for 1.1.0 release on modular community by @sstadick in https://github.com/BioRadOpenSource/ish/pull/39
- chore: Add CODEOWNERS, require DCO by @sstadick in https://github.com/BioRadOpenSource/ish/pull/40
- chore: add codeql badge by @sstadick in https://github.com/BioRadOpenSource/ish/pull/42
- fix: update with working rattler build by @sstadick in https://github.com/BioRadOpenSource/ish/pull/41
- fix: allow for using a basline simd width when compiling in rattler-build by @sstadick in https://github.com/BioRadOpenSource/ish/pull/43
Full Changelog: https://github.com/BioRadOpenSource/ish/compare/v1.1.0...v1.1.1
- Mojo
Published by sstadick 9 months ago
ish - v1.1.0
What's Changed
- chore: update to mojo 25.3 by @sstadick in https://github.com/BioRadOpenSource/ish/pull/23
- Fix/segfault by @sstadick in https://github.com/BioRadOpenSource/ish/pull/25
- fix: saturation check by @sstadick in https://github.com/BioRadOpenSource/ish/pull/27
- fix: bad resize and small pkg warnings by @sstadick in https://github.com/BioRadOpenSource/ish/pull/28
- feat: add circleci by @sstadick in https://github.com/BioRadOpenSource/ish/pull/29
- feat: improve ci by @sstadick in https://github.com/BioRadOpenSource/ish/pull/30
- chore: prep repo for release by @sstadick in https://github.com/BioRadOpenSource/ish/pull/31
- feat: FASTQ support along with code cleanup by @sstadick in https://github.com/BioRadOpenSource/ish/pull/32
- feat: use for-else for clarity in @parameter-for loops by @sstadick in https://github.com/BioRadOpenSource/ish/pull/33
- chore: bump version to 1.1.0 by @sstadick in https://github.com/BioRadOpenSource/ish/pull/34
- chore: clean up benchmarks by @sstadick in https://github.com/BioRadOpenSource/ish/pull/36
- chore: add notice file by @sstadick in https://github.com/BioRadOpenSource/ish/pull/35
- fix: better peek handling for fastx scenarios by @sstadick in https://github.com/BioRadOpenSource/ish/pull/38
Full Changelog: https://github.com/BioRadOpenSource/ish/compare/v1.0.0...v1.1.0
- Mojo
Published by sstadick 9 months ago