mibr_study
Science Score: 57.0%
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: leekj3133
- License: apache-2.0
- Language: Python
- Default Branch: main
- Size: 1.25 MB
Statistics
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 5
Metadata Files
README.md
MIBR: Multimodal NMIBC Recurrence Prediction Demo
Description:
This repository contains the frontend UI code and utility modules for a bladder cancer recurrence prediction model.
It supports user input, preprocessing, and integration with a deep learning–based survival prediction model.
⚠️ Due to internal restrictions, the trained model weights and execution pipeline are not included in this repository.
This version is intended for code structure review and documentation purposes only.
Files:
- home.py : Streamlit-based UI logic
- preprocess.py : Image preprocessing functions
- util.py : General utility functions
- requirements.txt : Python package dependencies (original environment)
- LICENSE : Project license
- README.md : Markdown version with full documentation
- .gitignore : Git exclusion configuration
Author:
Developer: leekj3133 GitHub: https://github.com/leekj3133/MIBR_study
Code and Data Availability
The recurrence prediction model developed in this study was implemented in Python 3.10 using TensorFlow 2.14 and the Keras API.
- Web Demonstration
A live demonstration of the recurrence prediction model is accessible at:
👉 https://nmibc-recurrence-prediction.streamlit.app/
This web application allows users to interactively test the model using example input data, without requiring local setup.
If you're interested in collaboration or would like to explore the model further, please contact the author.
Source Code (Web Interface & Sample Inference)
The source code for the web-based interface and sample inference logic is publicly available on GitHub:
👉 https://github.com/leekj3133/MIBR_studyModel Weights & Training Code
The full training pipeline, model weights, and backend modules are not publicly released due to institutional and legal restrictions
on clinical data originating from South Korea. These materials may be shared upon reasonable request and subject to approval
by the corresponding institutional review board (IRB), if applicable.Data Availability
The clinical and imaging datasets used in this study contain sensitive patient information and cannot be publicly disclosed.
However, a synthetic example dataset (not derived from real patient data) is included in the repository to demonstrate input format
and support reproducibility of the web interface. This setup ensures transparency while upholding data privacy and ethical research standards.Release & Citation This demonstration is archived under: DOI 10.5281/zenodo.16262080 Please cite as: JuYoung Lee & Se Young Choi (2025). Multimodal Deep Learning for Predicting Recurrence in NMIBC: Comparison with Traditional Risk Models. Zenodo. https://doi.org/10.5281/zenodo.16262080
License This project and its sample data are released under the CC0 1.0 Public Domain Dedication.
Contact To request access to model weights, full training code, or backend modules (subject to IRB approval), please contact the corresponding author.
Owner
- Name: JUYOUNG LEE
- Login: leekj3133
- Kind: user
- Repositories: 3
- Profile: https://github.com/leekj3133
jounir data scientist
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it using the following metadata."
title: "Multimodal Deep Learning for Predicting Recurrence in Non–muscle invasive bladder cancer: Comparison with Traditional Risk Models"
authors:
- family-names: Lee
given-names: JuYoung
affiliation: Medical R&D Center, Deepnoid, Inc., Seoul, Republic of Korea.
- family-names: Lee
given-names: Yong Seong
affiliation: Department of Urology, Chung-Ang University Gwangmyeong Hospital, Chung-Ang University College of Medicine, Gyeonggi-do, Republic of Korea.
- family-names: Lee
given-names: Jae Hyeok
affiliation: Medical R&D Center, Deepnoid, Inc., Seoul, Republic of Korea.
- family-names: Jung
given-names: Gu Cheol
affiliation: Medical R&D Center, Deepnoid, Inc., Seoul, Republic of Korea.
- family-names: Choi
given-names: Se Young
affiliation: Department of Urology, Chung-Ang University Hospital, Chung-Ang University College of Medicine, Seoul, Republic of Korea
version: "1.0"
date-released: 2025-07-21
license: CC0 1.0
repository-code: "https://github.com/leekj3133/MIBR_study"
url: "https://nmibc-recurrence-prediction.streamlit.app/"
keywords:
- NMIBC
- recurrence prediction
- multimodal deep learning
- AI
- bladder cancer
- Survival analysis
- Cystoscopy
- Clinical decision support
GitHub Events
Total
- Release event: 8
- Delete event: 6
- Push event: 11
- Create event: 7
Last Year
- Release event: 8
- Delete event: 6
- Push event: 11
- Create event: 7
Dependencies
- Pillow *
- joblib *
- keras *
- matplotlib *
- numpy *
- opencv-python-headless *
- openpyxl *
- pandas *
- scikit-image *
- scikit-learn *
- scipy *
- seaborn *
- streamlit *
- streamlit-ext *
- tensorflow ==2.12.0
- xgboost *