Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 3 DOI reference(s) in README
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (14.8%) to scientific vocabulary
Last synced: 9 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: leekj3133
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Size: 1.25 MB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 5
Created 12 months ago · Last pushed 11 months ago
Metadata Files
Readme License Citation

README.md

MIBR: Multimodal NMIBC Recurrence Prediction Demo

Description:

This repository contains the frontend UI code and utility modules for a bladder cancer recurrence prediction model.
It supports user input, preprocessing, and integration with a deep learning–based survival prediction model.

⚠️ Due to internal restrictions, the trained model weights and execution pipeline are not included in this repository.
This version is intended for code structure review and documentation purposes only.

Files:

  • home.py : Streamlit-based UI logic
  • preprocess.py : Image preprocessing functions
  • util.py : General utility functions
  • requirements.txt : Python package dependencies (original environment)
  • LICENSE : Project license
  • README.md : Markdown version with full documentation
  • .gitignore : Git exclusion configuration

Author:

Developer: leekj3133 GitHub: https://github.com/leekj3133/MIBR_study

Code and Data Availability

The recurrence prediction model developed in this study was implemented in Python 3.10 using TensorFlow 2.14 and the Keras API.

This web application allows users to interactively test the model using example input data, without requiring local setup.
If you're interested in collaboration or would like to explore the model further, please contact the author.

  • Source Code (Web Interface & Sample Inference)
    The source code for the web-based interface and sample inference logic is publicly available on GitHub:
    👉 https://github.com/leekj3133/MIBR_study

  • Model Weights & Training Code
    The full training pipeline, model weights, and backend modules are not publicly released due to institutional and legal restrictions
    on clinical data originating from South Korea. These materials may be shared upon reasonable request and subject to approval
    by the corresponding institutional review board (IRB), if applicable.

  • Data Availability
    The clinical and imaging datasets used in this study contain sensitive patient information and cannot be publicly disclosed.
    However, a synthetic example dataset (not derived from real patient data) is included in the repository to demonstrate input format
    and support reproducibility of the web interface. This setup ensures transparency while upholding data privacy and ethical research standards.

  • Release & Citation This demonstration is archived under: DOI 10.5281/zenodo.16262080 Please cite as: JuYoung Lee & Se Young Choi (2025). Multimodal Deep Learning for Predicting Recurrence in NMIBC: Comparison with Traditional Risk Models. Zenodo. https://doi.org/10.5281/zenodo.16262080

  • License This project and its sample data are released under the CC0 1.0 Public Domain Dedication.

  • Contact To request access to model weights, full training code, or backend modules (subject to IRB approval), please contact the corresponding author.

Owner

  • Name: JUYOUNG LEE
  • Login: leekj3133
  • Kind: user

jounir data scientist

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite it using the following metadata."
title: "Multimodal Deep Learning for Predicting Recurrence in Non–muscle invasive bladder cancer: Comparison with Traditional Risk Models"
authors:
  - family-names: Lee
    given-names: JuYoung
    affiliation: Medical R&D Center, Deepnoid, Inc., Seoul, Republic of Korea.
  - family-names: Lee
    given-names: Yong Seong
    affiliation: Department of Urology, Chung-Ang University Gwangmyeong Hospital, Chung-Ang University College of Medicine, Gyeonggi-do, Republic of Korea.
  - family-names: Lee
    given-names: Jae Hyeok
    affiliation: Medical R&D Center, Deepnoid, Inc., Seoul, Republic of Korea.
  - family-names: Jung
    given-names: Gu Cheol
    affiliation: Medical R&D Center, Deepnoid, Inc., Seoul, Republic of Korea.
  - family-names: Choi
    given-names: Se Young
    affiliation: Department of Urology, Chung-Ang University Hospital, Chung-Ang University College of Medicine, Seoul, Republic of Korea 

version: "1.0"
date-released: 2025-07-21
license: CC0 1.0
repository-code: "https://github.com/leekj3133/MIBR_study"
url: "https://nmibc-recurrence-prediction.streamlit.app/"
keywords:
  - NMIBC
  - recurrence prediction
  - multimodal deep learning
  - AI
  - bladder cancer
  - Survival analysis
  - Cystoscopy
  - Clinical decision support
  

GitHub Events

Total
  • Release event: 8
  • Delete event: 6
  • Push event: 11
  • Create event: 7
Last Year
  • Release event: 8
  • Delete event: 6
  • Push event: 11
  • Create event: 7

Dependencies

requirements.txt pypi
  • Pillow *
  • joblib *
  • keras *
  • matplotlib *
  • numpy *
  • opencv-python-headless *
  • openpyxl *
  • pandas *
  • scikit-image *
  • scikit-learn *
  • scipy *
  • seaborn *
  • streamlit *
  • streamlit-ext *
  • tensorflow ==2.12.0
  • xgboost *