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Recent Releases of sdc-bids-dmri

sdc-bids-dmri - SDC-BIDS-dMRI v11.0.0

SDC-BIDS-dMRI v11.0.0: Carpentries Workbench infrastructure

Summary of changes: - Transition to Carpentries Workbench infrastructure. - Post-transition fixes. - Add back notebook run workflow file. - Fix episode links in README. - Fix the website status badge target.

First release after transitioning to the new Carpentries Workbench infrastructure.

What's Changed

  • BUG: Post Workbench transition fixes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/248
  • BUG: Remove spare backslash in LaTeX inequality sign by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/250
  • ENH: Fix website build deployment status badge workflow target by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/252
  • ENH: Add notebook run GitHub Actions workflow file by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/251
  • DOC: Fix episode links in README content table by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/253

Full Changelog: https://github.com/carpentries-incubator/SDC-BIDS-dMRI/compare/v10.0.0...v11.0.0

- Jupyter Notebook
Published by jhlegarreta over 2 years ago

sdc-bids-dmri - SDC-BIDS-dMRI v10.0.0

SDC-BIDS-dMRI v10.0.0: release all recent enhancements.

Summary of changes: - Fixes and improvements to episode contents. - Fixes to show the figures, and how they are sorted. - Turn on KaTeX to render LaTeX maths. - Upstream improvements to infrastructure files (e.g. theme, etc.).

Last release prior to transitioning to the new Carpentries Workbench infrastructure.

What's Changed

  • Ostanle2 edits - notebook 2 by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/3
  • Update organization and pull changes by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/7
  • Bump bleach from 3.1.0 to 3.1.4 by @dependabot in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/9
  • use remote themeUse remote theme by @fmichonneau in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/13
  • DOC: Add content to the lesson's overview page by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/15
  • DOC: Fix spelling and capitalize acronyms in lesson 03 by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/16
  • BUG: Rename eigenvalues and eigenvector images by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/17
  • DOC: Add additional explanations to DTI scalar measures by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/18
  • DOC: Fix typo in index.md by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/19
  • BUG: Remove conflict-derived git traces in 03-DTI lesson by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/20
  • DOC: Add instructor notes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/22
  • ENH: Add GitHub Actions CI builds for notebooks by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/23
  • ENH: Add .idea folder to .gitignore by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/26
  • ENH: Fix README GitHub Actions badge by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/32
  • Bump notebook from 5.7.8 to 6.1.5 by @dependabot in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/33
  • update author and maintainer list by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/25
  • FIX: Trim Python package requirements by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/35
  • ENH: Add additional local reconstruction model lesson by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/27
  • MAINT: Refactoring of notebook 2 & convert to carpentries format by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/21
  • DOC: Add reference for QSIPrep by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/38
  • ENH: Add osfclient to the requirements list by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/40
  • FIX: Update .ipynb path and test on multiple Python versions by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/39
  • ENH: Make the FURY screenshots be displayed inline by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/42
  • FIX: Update file paths for website build by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/43
  • STY: Rename files and folders to increase consistency with markdown files by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/45
  • ENH: Add probabilistic tractography lesson by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/36
  • ENH: Re-organize lessons by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/47
  • DOC: Add lesson information to config file by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/49
  • DOC: Add missing HTML code closing tag by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/53
  • DOC: Add terms to glossary by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/54
  • DOC: Improve lesson information in README by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/51
  • BUG: Remove duplicate probabilistic tractography episode by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/52
  • BUG: Remove the unnecessary code environment for the glossary terms by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/55
  • DOC: Add setup instructions by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/50
  • DOC: Remove redundant instructor notes title by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/58
  • BUG: Fix setup instructions file syntax by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/57
  • BUG: Fix links.md file comment tag syntax by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/56
  • ENH: Remove unnecessary content from the CSD episode by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/60
  • ENH: Refactor tractography episodes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/59
  • DOC: Improve syntax in prob tracking episode callout by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/62
  • MAINT: Update dti episode image and dataset by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/64
  • MAINT: Update exercise solution by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/65
  • Manual episode order for Figures by @tobyhodges in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/68
  • STYLE: Use the episode order feature by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/67
  • ENH: Add different orientations to CSD Episode by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/69
  • DOC: Add meaningful figure captions by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/72
  • DOC: Fix typo in citation author name by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/70
  • STY: Sync template and update Makefile/Gemfile by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/73
  • BUG: Mark output cell as Markdown in CSD episode by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/75
  • DOC: Declare no reported problems in instructor notes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/74
  • STYLE: Prefer {{ relative_root_path }} to resolve figure paths by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/71
  • ENH: Put the fury camera setup into a function by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/76
  • DOC: Add discussion section about camera setup by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/77
  • DOC: Improve the completeness of tractography method list by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/80
  • DOC: Add further aspects of dMRI to discussion by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/79
  • FIX: Update image display in DTI lesson by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/84
  • include basepath.html for relativeroot_path by @tobyhodges in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/86
  • ENH: Add orientation concepts figure by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/82
  • BUG: Add missing base path include by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/87
  • STYLE: Change tabs to whitespaces by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/89
  • BUG: Use the right bvec file in prob tractography episode by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/91
  • BUG: Fix probabilistic tractography notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/90
  • BUG: Fix deterministic tractography notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/94
  • STYLE: Comply with PEP 8 by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/95
  • ENH: Add coronal and sagittal views to GFA plot by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/97
  • ENH: Fix GitHub actions notebook test workflow by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/96
  • FIX: Fix broken paths in intro notebook by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/99
  • BUG: Update probabilistic tractography episode by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/103
  • ENH: Update deterministic tractography episode by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/104
  • ENH: Constrain the slices to be shown to three dimensions by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/98
  • ENH: Add SH order theory by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/106
  • FIX: Clear deterministic tractography jupyter outputs by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/109
  • ENH: Define the SH order at a single location by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/107
  • FIX: Update Binder link by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/108
  • ENH: Change SH order in probabilistic tractography notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/113
  • ENH: Save and show the probabilistic tracking episode peaks by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/114
  • ENH: Remove Travis CI config file by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/111
  • ENH: Reuse the anatomical orientation views generating method by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/92
  • ENH: Bring 404 page from lesson example by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/112
  • STYLE: Remove excessive whitespace around RGB FA map plot by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/119
  • BUG: Fix the anatomical slice figure sorting by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/122
  • ENH: Remove empty cell from CSD notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/124
  • STYLE: Mark numeric cell as Markdown in CSD episode by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/123
  • ENH: Call NiBabel get_fdata() instead of get_data() by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/125
  • DOC: Add info about downloading single subject from OSF by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/126
  • BUG: Fix call to visualization helper and skip fury visualizations in tests by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/128
  • FIX: Fix slice orientations by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/121
  • BUG: Call to visualization module by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/130
  • FIX: Update and sync DTI episode by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/116
  • FIX: Update pythonpath by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/133
  • STY: Update DTI notebook by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/132
  • ENH: Update probabilistic tractography notebook by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/134
  • FIX: Actions workflow - rm zip by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/135
  • ENH: Update deterministic tractography by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/120
  • ENH: Increase the test workflow scheduled frequency by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/136
  • FIX: Reset notebook kernel by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/137
  • ENH: Add csd exercise by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/117
  • FIX: add skip tag for utils by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/139
  • Update styles 2021-04-20 by @zkamvar in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/140
  • ENH: Split apart visualization cell in CSD exercise by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/142
  • STYLE: Fix unknown code block warning by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/146
  • STYLE: Use a separate, lesson-specific links file by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/145
  • ENH: Add website build workflow status badge to README by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/144
  • ENH: Fix cell test skip command by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/148
  • MAINT: Migrate master branch to main by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/149
  • STYLE: Prefer using {{ relative_root_path }} to resolve episode links by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/151
  • STYLE: Limit line length in Markdown files by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/150
  • STYLE: Remove unnecessary whitespaces by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/152
  • FIX: Update Github Actions caching by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/153
  • STYLE: Bump style changes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/154
  • FIX: Update to pip install cache by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/155
  • STYLE: Use inline image class by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/157
  • STYLE: Remove the unnecessary img-responsive class for images by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/158
  • STYLE: Bump style changes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/156
  • STYLE: Allow rendering LaTeX math syntax by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/161
  • DOC: Fix figure generation method docstring by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/163
  • ENH: Test non-solution notebooks by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/162
  • BUG: Fix introduction episode non-solution notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/166
  • STYLE: Improve style by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/165
  • BUG: Fix data location in non solution introduction notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/167
  • ENH: Skip visualization cells in non-solution CSD notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/168
  • ENH: Update DIPY fiber response function method call by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/170
  • ENH: Allow initial dot for BIDS extension entity by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/169
  • BUG: Fix DIPY fiber response function method call parameter by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/174
  • ENH: Run GitHub actions build test workflow on PRs by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/172
  • BUG: Fix data paths in preprocessing episode solutions notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/176
  • BUG: Fix data paths in preprocessing episode solutions notebook p2 by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/177
  • BUG: Fix data paths in preprocessing episode solutions notebook by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/180
  • ENH: Install FSL and ANTs within GitHub Actions by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/175
  • ENH: Update Binder environment by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/178
  • ENH: Use Exercise2 extension to synchronize solution and non-solution notebooks by @josephmje in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/182
  • DOC: Fix typo in Build, test workflow step name by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/183
  • STYLE: Remove unused imports by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/186
  • ENH: Allow initial dot for BIDS extension entity by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/187
  • STYLE: Remove trailing whitespaces by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/189
  • ENH: Add AD and RD map figures to DTI episode by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/191
  • STYLE: Move imports closer to used location in prob tractogr episode by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/188
  • fix formatting of block quote code by @zkamvar in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/192
  • DOC: Remove orphan character in Python code snippet by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/194
  • ENH: Increase text style consistency by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/198
  • ENH: Switch to JupyterLab by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/200
  • DOC: Add memory limitation notes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/201
  • turn katex on by @fmichonneau in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/202
  • STYLE: Prefer f-strings over %-formatting for string substitution by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/203
  • ENH: Allow running visualization cells in CI workflow by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/204
  • ENH: Remove Python package cache restore in GHA workflow by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/206
  • ENH: Add PyBIDS leading dot warning by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/211
  • urgent: fix workflows by @zkamvar in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/213
  • ENH: Pin matplotlib package version by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/214
  • ENH: Update actions versions to use Node.js 16 by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/215
  • ENH: Update DIPY and FURY by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/218
  • MAINT: Clarification and spelling updates by @kaitj in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/212
  • STYLE: Increase style consistency across episodes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/219
  • ENH: Drop Python 3.7 and add 3.10 to testing matrix by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/217
  • STYLE: Fix DTI episode radial diffusivity inline picture markup by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/223
  • Update setup-python version by @georgebisbas in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/224
  • ENH: Synchronize Binder environment package versions with requirements by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/227
  • BUG: Fix package dependency spec in Binder when using pip by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/229
  • ENH: Conform to current FSL installation instructions by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/231
  • ENH: Bump DIPY to version 1.7.0 by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/232
  • ENH: Clean up FSL installer download step by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/233
  • BUG: Fix FSL eddy command by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/234
  • ENH: Miscellaneous improvements to build, test GHA workflow by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/235
  • BUG: Fix Ubuntu dependencies caching exception paths by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/236
  • DOC: Fix preprocessing episode b0 brainmask image syntax by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/237
  • STYLE: Allow rendering LaTeX math syntax: intro and preproc episodes by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/238
  • DOC: Update introduction and preprocessing lessons by @Bradley-Karat in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/222
  • STYLE: Improve style across miscellaneous episode files by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/244
  • ENH: Add Python 3.11 to the CI build matrix by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/243
  • ENH: Set up correctly branches filter in build, test GHA workflow file by @jhlegarreta in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/242

New Contributors

  • @dependabot made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/9
  • @fmichonneau made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/13
  • @jhlegarreta made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/15
  • @josephmje made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/35
  • @tobyhodges made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/68
  • @zkamvar made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/140
  • @georgebisbas made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/224
  • @Bradley-Karat made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-dMRI/pull/222

Full Changelog: https://github.com/carpentries-incubator/SDC-BIDS-dMRI/compare/v9.5.3...v10.0.0

- Jupyter Notebook
Published by jhlegarreta over 2 years ago