manuscript

Writing my masters thesis for submission to Methods in Ecology and Evolution

https://github.com/sagesteppe/manuscript

Science Score: 18.0%

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    Low similarity (1.0%) to scientific vocabulary

Keywords

bees genomics machine-learning metagenomics phenology pollination sdm
Last synced: 6 months ago · JSON representation ·

Repository

Writing my masters thesis for submission to Methods in Ecology and Evolution

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  • Host: GitHub
  • Owner: sagesteppe
  • Language: TeX
  • Default Branch: main
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bees genomics machine-learning metagenomics phenology pollination sdm
Created over 3 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Citation

README.md

ManuSCript

This is the repo for writing up my masters thesis. I wish I had been better at tex to have started this sooner.

Owner

  • Name: Reed
  • Login: sagesteppe
  • Kind: user
  • Location: Chicago and Western North America

I shape informed land management decisions using data science to synthesize field surveys, remote sensing, & genetics data.

Citation (citations/citations.bib)

@inproceedings{Gage2013HistoricalRO,
  title={Historical range of variation assessment for wetland and riparian ecosystems, U.S. Forest Service Rocky Mountain Region},
  author={Edward Gage and David J. Cooper},
  year={2013}
}

@article{goulson2008decline,
  title={The decline and conservation of bumblebees},
  author={Goulson, Dave and Lye, Gillian and Darvill, Ben},
  journal={Annual review of entomology},
  volume={53},
  pages={191--208},
  year={2008},
  publisher={Annual Reviews}
}

@article{mclay2021new,
  title={New targets acquired: Improving locus recovery from the Angiosperms353 probe set},
  author={McLay, Todd GB and Birch, Joanne L and Gunn, Bee F and Ning, Weixuan and Tate, Jennifer A and Nauheimer, Lars and Joyce, Elizabeth M and Simpson, Lalita and Schmidt-Lebuhn, Alexander N and , William J and others},
  journal={Applications in plant sciences},
  volume={9},
  number={7},
  year={2021},
  publisher={Wiley Online Library}
}

@article{omernik1987ecoregions,
  title={Ecoregions of the conterminous United States},
  author={Omernik, James M},
  journal={Annals of the Association of American geographers},
  volume={77},
  number={1},
  pages={118--125},
  year={1987},
  publisher={Wiley Online Library}
}

@article{camacho2009blast,
  title={BLAST+: architecture and applications},
  author={Camacho, Christiam and Coulouris, George and Avagyan, Vahram and Ma, Ning and Papadopoulos, Jason and Bealer, Kevin and Madden, Thomas L},
  journal={BMC bioinformatics},
  volume={10},
  number={1},
  pages={1--9},
  year={2009},
  publisher={Springer}
}

@article{johnson2019universal,
  title={A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering},
  author={Johnson, Matthew G and Pokorny, Lisa and Dodsworth, Steven and Botigue, Laura R and Cowan, Robyn S and Devault, Alison and Eiserhardt, Wolf L and Epitawalage, Niroshini and Forest, F{\'e}lix and Kim, Jan T and others},
  journal={Systematic biology},
  volume={68},
  number={4},
  pages={594--606},
  year={2019},
  publisher={Oxford University Press}
}

@article{sdmPackage,
    title = {sdm: a reproducible and extensible R platform for species distribution modelling},
    author = {Babak Naimi and Miguel B. Araujo},
    year = {2016},
    journal = {Ecography},
    volume = {39},
    pages = {368-375},
    doi = {10.1111/ecog.01881},
  }
  
@article{oliver2009cryptic,
  title={Cryptic diversity in vertebrates: molecular data double estimates of species diversity in a radiation of Australian lizards (Diplodactylus, Gekkota)},
  author={Oliver, Paul M and Adams, Mark and Lee, Michael SY and Hutchinson, Mark N and Doughty, Paul},
  journal={Proceedings of the Royal Society B: Biological Sciences},
  volume={276},
  number={1664},
  pages={2001--2007},
  year={2009},
  publisher={The Royal Society London}
}

@article{doylesCTAB,
  title={A rapid DNA isolation procedure for small quantities of fresh leaf tissue},
  author={Doyle, J.J. and Doyle, J.L.},
  journal={Phytochemical Bulletin},
  volume={19},
  pages={11-15},
  year={1987},
  publisher={Botanical Society of America}
}

@article{moran1950notes,
  title={Notes on continuous stochastic phenomena},
  author={Moran, Patrick AP},
  journal={Biometrika},
  volume={37},
  number={1/2},
  pages={17--23},
  year={1950},
  publisher={JSTOR}
}

@article{johnson2016hybpiper,
  title={HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment},
  author={Johnson, Matthew G and Gardner, Elliot M and Liu, Yang and Medina, Rafael and Goffinet, Bernard and Shaw, A Jonathan and Zerega, Nyree JC and Wickett, Norman J},
  journal={Applications in plant sciences},
  volume={4},
  number={7},
  pages={1600016},
  year={2016},
  publisher={Wiley Online Library}
}

 @article{spdep,
    author = {Roger Bivand and David W. S. Wong},
    title = {Comparing implementations of global and local indicators of spatial association},
    journal = {TEST},
    year = {2018},
    volume = {27},
    number = {3},
    pages = {716--748},
    doi = {10.1007/s11749-018-0599-x},
  }


@article{usdm2014,
  title = {Where is positional uncertainty a problem for species distribution modelling},
  author = {Babak Naimi and Nicholas a.s. Hamm and Thomas A. Groen and Andrew K. Skidmore and Albertus G. Toxopeus},
  year = {2014},
  journal = {Ecography},
  volume = {37},
  pages = {191-203},
  doi = {10.1111/j.1600-0587.2013.00205.x},
 }
 
@article{wang2016locally,
  title={Locally downscaled and spatially customizable climate data for historical and future periods for North America},
  author={Wang, Tongli and Hamann, Andreas and Spittlehouse, Dave and Carroll, Carlos},
  journal={PloS one},
  volume={11},
  number={6},
  pages={e0156720},
  year={2016},
  publisher={Public Library of Science San Francisco, CA USA}
}

@article{wilson2016remotely,
  title={Remotely sensed high-resolution global cloud dynamics for predicting ecosystem and biodiversity distributions},
  author={Wilson, Adam M and Jetz, Walter},
  journal={PLoS biology},
  volume={14},
  number={3},
  pages={e1002415},
  year={2016},
  publisher={Public Library of Science San Francisco, CA USA}
}


@article{liu2014identification,
  title={Identification of species in the angiosperm family Apiaceae using DNA barcodes},
  author={Liu, Jinxin and Shi, Linchun and Han, Jianping and Li, Geng and Lu, Heng and Hou, Jingyi and Zhou, Xiaoteng and Meng, Fanyun and Downie, Stephen R},
  journal={Molecular ecology resources},
  volume={14},
  number={6},
  pages={1231--1238},
  year={2014},
  publisher={Wiley Online Library}
}

@article{brosi2013single,
  title={Single pollinator species losses reduce floral fidelity and plant reproductive function},
  author={Brosi, Berry J and Briggs, Heather M},
  journal={Proceedings of the National Academy of Sciences},
  volume={110},
  number={32},
  pages={13044--13048},
  year={2013},
  publisher={National Acad Sciences}
}

@article{beattie1971technique,
  title={A technique for the study of insect-borne pollen},
  author={Beattie, AJ},
  journal={The Pan-Pacific Entomologist},
  volume={47},
  number={1},
  pages={82},
  year={1971}
}

@article{lu2017bracken,
  title={Bracken: estimating species abundance in metagenomics data},
  author={Lu, Jennifer and Breitwieser, Florian P and Thielen, Peter and Salzberg, Steven L},
  journal={PeerJ Computer Science},
  volume={3},
  pages={e104},
  year={2017},
  publisher={PeerJ Inc.}
}

@article{wood2019improved,
  title={Improved metagenomic analysis with Kraken 2},
  author={Wood, Derrick E and Lu, Jennifer and Langmead, Ben},
  journal={Genome biology},
  volume={20},
  number={1},
  pages={1--13},
  year={2019},
  publisher={Springer}
}

@article{bolger2014trimmomatic,
  title={Trimmomatic: a flexible read trimming tool for illumina NGS data},
  author={Bolger, Anthony and Giorgi, F},
  journal={Bioinformatics},
  volume={30},
  number={15},
  pages={2114--2120},
  year={2014}
}

@article{inextArticle,
    title = {Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies},
    author = {Anne Chao and Nicholas J. Gotelli and T. C. Hsieh and Elizabeth L. Sande and K. H. Ma and Robert K. Colwell and Aaron M. Ellison},
    journal = {Ecological Monographs},
    year = {2014},
    volume = {84},
    pages = {45--67},
  }
  
 @article{guertler2014automated,
  title={Automated DNA extraction from pollen in honey},
  author={Guertler, Patrick and Eicheldinger, Adelina and Muschler, Paul and Goerlich, Ottmar and Busch, Ulrich},
  journal={Food Chemistry},
  volume={149},
  pages={302--306},
  year={2014},
  publisher={Elsevier}
}


@Manual{bien2022,
    title = {BIEN: Tools for Accessing the Botanical Information and Ecology
Network Database},
    author = {Brian Maitner},
    year = {2022},
    note = {R package version 1.2.5},
    url = {https://CRAN.R-project.org/package=BIEN},
 }
  
@Manual{cluster2022,
    title = {cluster: Cluster Analysis Basics and Extensions},
    author = {Martin Maechler and Peter Rousseeuw and Anja Struyf and Mia Hubert and Kurt Hornik},
    year = {2022},
    url = {https://CRAN.R-project.org/package=cluster},
    note = {R package version 2.1.3 --- For new features, see the 'Changelog' file (in the package source)},
 }
 
@Manual{inextPackage,
    title = {iNEXT: Interpolation and Extrapolation for Species Diversity},
    author = {T. C. Hsieh and K. H. Ma and Anne Chao},
    year = {2020},
    note = {R package version 2.0.20},
    url = {http://chao.stat.nthu.edu.tw/wordpress/software_download/},
 }
 
@Manual{vegans2022,
    title = {vegan: Community Ecology Package},
    author = {Jari Oksanen and Gavin L. Simpson and F. Guillaume Blanchet and Roeland Kindt and Pierre Legendre and Peter R. Minchin and R.B. O'Hara and Peter Solymos and M. Henry H. Stevens and Eduard Szoecs and Helene Wagner and Matt Barbour and Michael Bedward and Ben Bolker and Daniel Borcard and Gustavo Carvalho and Michael Chirico and Miquel De Caceres and Sebastien Durand and Heloisa Beatriz Antoniazi Evangelista and Rich FitzJohn and Michael Friendly and Brendan Furneaux and Geoffrey Hannigan and Mark O. Hill and Leo Lahti and Dan McGlinn and Marie-Helene Ouellette and Eduardo Ribeiro Cunha and Tyler Smith and Adrian Stier and Cajo J.F. Ter Braak and James Weedon},
    year = {2022},
    note = {R package version 2.6-2},
    url = {https://CRAN.R-project.org/package=vegan},
  }

@Manual{fpc2022,
    title = {fpc: Flexible Procedures for Clustering},
    author = {Christian Hennig},
    year = {2020},
    note = {R package version 2.2-9},
    url = {https://CRAN.R-project.org/package=fpc},
 }
  

@article{janzen2017nuclear,
  title={Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology},
  author={Janzen, Daniel H and Burns, John M and Cong, Qian and Hallwachs, Winnie and Dapkey, Tanya and Manjunath, Ramya and Hajibabaei, Mehrdad and Hebert, Paul DN and Grishin, Nick V},
  journal={Proceedings of the National Academy of Sciences},
  volume={114},
  number={31},
  pages={8313--8318},
  year={2017},
  publisher={National Acad Sciences}
}

@article{cameron2020global,
  title={Global trends in bumble bee health},
  author={Cameron, Sydney A and Sadd, Ben M},
  journal={Annual review of entomology},
  volume={65},
  pages={209--232},
  year={2020},
  publisher={Annual Reviews}
}

@article{baker2021exploring,
  author = {Baker, William and Dodsworth, Steven and Forest, Félix and Graham, Sean and Johnson, Matthew and McDonnell, Angela and Pokorny, Lisa and Tate, Jennifer and Wicke, Susann and Wickett, Norman},
  year = {2021},
  month = {07},
  pages = {},
  title = {Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants},
  volume = {108},
  journal = {American Journal of Botany},
  doi = {10.1002/ajb2.1703}
}

@article{belitz2020accuracy,
  title={The accuracy of phenology estimators for use with sparsely sampled presence-only observations},
  author={Belitz, Michael W and Larsen, Elise A and Ries, Leslie and Guralnick, Robert P},
  journal={Methods in Ecology and Evolution},
  volume={11},
  number={10},
  pages={1273--1285},
  year={2020},
  publisher={Wiley Online Library}
}

@article{tran2019cloud,
  title={A cloud-free MODIS snow cover dataset for the contiguous United States from 2000 to 2017},
  author={Tran, Hoang and Nguyen, Phu and Ombadi, Mohammed and Hsu, Kuo-lin and Sorooshian, Soroosh and Qing, Xia},
  journal={Scientific data},
  volume={6},
  number={1},
  pages={1--13},
  year={2019},
  publisher={Nature Publishing Group}
}

@article{iler2021conceptual,
  title={Conceptual and practical issues limit the utility of statistical estimators of phenological events},
  author={Iler, Amy M and Humphrey, Parris T and Ogilvie, Jane E and CaraDonna, Paul J},
  journal={Ecosphere},
  volume={12},
  number={11},
  pages={e03828},
  year={2021},
  publisher={Wiley Online Library}
}

@article{prim1957minimum,
  title={Shortest connection networks and some generalisations},
  author={Prim, R.C.},
  journal={Bell System Technical Journal},
  volume={36},
  pages={1389-1401},
  year={1957},
  publisher={American Telephone and Telegraph Company}
}

@Manual{caret,
   title = {caret: Classification and Regression Training},
   author = {Max Kuhn},
   year = {2022},
   note = {R package version 6.0-92},
   url = {https://CRAN.R-project.org/package=caret},
 }
 
 @article{hengl2017soilgrids250m,
  title={SoilGrids250m: Global gridded soil information based on machine learning},
  author={Hengl, Tomislav and Mendes de Jesus, Jorge and Heuvelink, Gerard BM and Ruiperez Gonzalez, Maria and Kilibarda, Milan and Blagoti{\'c}, Aleksandar and Shangguan, Wei and Wright, Marvin N and Geng, Xiaoyuan and Bauer-Marschallinger, Bernhard and others},
  journal={PLoS one},
  volume={12},
  number={2},
  pages={e0169748},
  year={2017},
  publisher={Public Library of Science San Francisco, CA USA}
}

@article{robinson2014earthenv,
  title={EarthEnv-DEM90: A nearly-global, void-free, multi-scale smoothed, 90m digital elevation model from fused ASTER and SRTM data},
  author={Robinson, Natalie and Regetz, James and Guralnick, Robert P},
  journal={ISPRS Journal of Photogrammetry and Remote Sensing},
  volume={87},
  pages={57--67},
  year={2014},
  publisher={Elsevier}
}

@article{pearse2017statistical,
  title={A statistical estimator for determining the limits of contemporary and historic phenology},
  author={Pearse, William D and Davis, Charles C and Inouye, David W and Primack, Richard B and Davies, T Jonathan},
  journal={Nature Ecology \& Evolution},
  volume={1},
  number={12},
  pages={1876--1882},
  year={2017},
  publisher={Nature Publishing Group}
}

@article{baker2021PAFTOL,
    author = {Baker, William J and Bailey, Paul and Barber, Vanessa and Barker, Abigail and Bellot, Sidonie and Bishop, David and Botigué, Laura R and Brewer, Grace and Carruthers, Tom and Clarkson, James J and Cook, Jeffrey and Cowan, Robyn S and Dodsworth, Steven and Epitawalage, Niroshini and Françoso, Elaine and Gallego, Berta and Johnson, Matthew G and Kim, Jan T and Leempoel, Kevin and Maurin, Olivier and Mcginnie, Catherine and Pokorny, Lisa and Roy, Shyamali and Stone, Malcolm and Toledo, Eduardo and Wickett, Norman J and Zuntini, Alexandre R and Eiserhardt, Wolf L and Kersey, Paul J and Leitch, Ilia J and Forest, Félix},
    title = "{A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life}",
    journal = {Systematic Biology},
    volume = {71},
    number = {2},
    pages = {301-319},
    year = {2021},
    month = {05},
    issn = {1063-5157},
    doi = {10.1093/sysbio/syab035},
    url = {https://doi.org/10.1093/sysbio/syab035},
    eprint = {https://academic.oup.com/sysbio/article-pdf/71/2/301/42493380/syab035.pdf},
}

@article{darwin2022project,
  author = {Darwin Tree of Life Project Consortium  and Mark Blaxter  and Nova Mieszkowska  and Federica Di Palma  and Peter Holland  and Richard Durbin  and Thomas Richards  and Matthew Berriman  and Paul Kersey  and Peter Hollingsworth  and Willie Wilson  and Alex Twyford  and Ester Gaya  and Mara Lawniczak  and Owen Lewis  and Gavin Broad  and Kevin Howe  and Michelle Hart  and Paul Flicek  and Ian Barnes },
  title = {Sequence locally, think globally: The Darwin Tree of Life Project},
  journal = {Proceedings of the National Academy of Sciences},
  volume = {119},
  number = {4},
  pages = {e2115642118},
  year = {2022},
  doi = {10.1073/pnas.2115642118},
  URL = {https://www.pnas.org/doi/abs/10.1073/pnas.2115642118},
  eprint = {https://www.pnas.org/doi/pdf/10.1073/pnas.2115642118}
}

@article{lewin2022biogenome,
  author = {Harris A. Lewin  and Stephen Richards  and Erez Lieberman Aiden  and Miguel L. Allende  and John M. Archibald  and Miklós Bálint  and Katharine B. Barker  and Bridget Baumgartner  and Katherine Belov  and Giorgio Bertorelle  and Mark L. Blaxter  and Jing Cai  and Nicolette D. Caperello  and Keith Carlson  and Juan Carlos Castilla-Rubio  and Shu-Miaw Chaw  and Lei Chen  and Anna K. Childers  and Jonathan A. Coddington  and Dalia A. Conde  and Montserrat Corominas  and Keith A. Crandall  and Andrew J. Crawford  and Federica DiPalma  and Richard Durbin  and ThankGod E. Ebenezer  and Scott V. Edwards  and Olivier Fedrigo  and Paul Flicek  and Giulio Formenti  and Richard A. Gibbs  and M. Thomas P. Gilbert  and Melissa M. Goldstein  and Jennifer Marshall Graves  and Henry T. Greely  and Igor V. Grigoriev  and Kevin J. Hackett  and Neil Hall  and David Haussler  and Kristofer M. Helgen  and Carolyn J. Hogg  and Sachiko Isobe  and Kjetill Sigurd Jakobsen  and Axel Janke  and Erich D. Jarvis  and Warren E. Johnson  and Steven J. M. Jones  and Elinor K. Karlsson  and Paul J. Kersey  and Jin-Hyoung Kim  and W. John Kress  and Shigehiro Kuraku  and Mara K. N. Lawniczak  and James H. Leebens-Mack  and Xueyan Li  and Kerstin Lindblad-Toh  and Xin Liu  and Jose V. Lopez  and Tomas Marques-Bonet  and Sophie Mazard  and Jonna A. K. Mazet  and Camila J. Mazzoni  and Eugene W. Myers  and Rachel J. O’Neill  and Sadye Paez  and Hyun Park  and Gene E. Robinson  and Cristina Roquet  and Oliver A. Ryder  and Jamal S. M. Sabir  and H. Bradley Shaffer  and Timothy M. Shank  and Jacob S. Sherkow  and Pamela S. Soltis  and Boping Tang  and Leho Tedersoo  and Marcela Uliano-Silva  and Kun Wang  and Xiaofeng Wei  and Regina Wetzer  and Julia L. Wilson  and Xun Xu  and Huanming Yang  and Anne D. Yoder  and Guojie Zhang },
  title = {The Earth BioGenome Project 2020: Starting the clock},
  journal = {Proceedings of the National Academy of Sciences},
  volume = {119},
  number = {4},
  pages = {e2115635118},
  year = {2022},
  doi = {10.1073/pnas.2115635118},
  URL = {https://www.pnas.org/doi/abs/10.1073/pnas.2115635118},
  eprint = {https://www.pnas.org/doi/pdf/10.1073/pnas.2115635118}
 }


@article{cheng2018tenkp,
    author = {Cheng, Shifeng and Melkonian, Michael and Smith, Stephen A and Brockington, Samuel and Archibald, John M and Delaux, Pierre-Marc and Li, Fay-Wei and Melkonian, Barbara and Mavrodiev, Evgeny V and Sun, Wenjing and Fu, Yuan and Yang, Huanming and Soltis, Douglas E and Graham, Sean W and Soltis, Pamela S and Liu, Xin and Xu, Xun and Wong, Gane Ka-Shu},
    title = "{10KP: A phylodiverse genome sequencing plan}",
    journal = {GigaScience},
    volume = {7},
    number = {3},
    year = {2018},
    month = {02},
    issn = {2047-217X},
    doi = {10.1093/gigascience/giy013},
    url = {https://doi.org/10.1093/gigascience/giy013},
    note = {giy013},
    eprint = {https://academic.oup.com/gigascience/article-pdf/7/3/giy013/24622417/giy013.pdf},
}


@article{fraser2007vpc,
    author = {Frase, Barbara A., and Buck, Paul},
    title = "{Vascular Plants of the Gothic Area}",
    year = {2007},
    url = {https://www.digitalrmbl.org/wp-content/uploads/2016/05/vascularplantlist_20071.pdf},
}

@article{govaerts2021world,
  title={The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity},
  author={Govaerts, Rafa{\"e}l and Nic Lughadha, Eimear and Black, Nicholas and Turner, Robert and Paton, Alan},
  journal={Scientific Data},
  volume={8},
  number={1},
  pages={1--10},
  year={2021},
  publisher={Nature Publishing Group}
}

@article{barker2021pollen,
    author = {Barker, Daniel A and Arceo-Gomez, Gerardo},
    title = "{Pollen transport networks reveal highly diverse and temporally stable plant–pollinator interactions in an Appalachian floral community}",
    journal = {AoB PLANTS},
    volume = {13},
    number = {5},
    year = {2021},
    month = {09},
    issn = {2041-2851},
    doi = {10.1093/aobpla/plab062},
    url = {https://doi.org/10.1093/aobpla/plab062},
    note = {plab062},
    eprint = {https://academic.oup.com/aobpla/article-pdf/13/5/plab062/40575845/plab062.pdf},
}

@article{zhao2019topology,
  author = {Zhao, Yan-Hui and Lázaro, Amparo and Ren, Zong-Xin and Zhou, Wei and Li, Hai-Dong and Tao, Zhi-Bin and Xu, Kun and Wu, Zhi-Kun and Wolfe, Lorne M. and Li, De-Zhu and Wang, Hong},
  title = {The topological differences between visitation and pollen transport networks: a comparison in species rich communities of the Himalaya–Hengduan Mountains},
  journal = {Oikos},
  volume = {128},
  number = {4},
  pages = {551-562},
  keywords = {cheater, flower visitor, modularity, mutualistic network, nestedness, pollen load analysis},
  doi = {https://doi.org/10.1111/oik.05262},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/oik.05262},
  eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/oik.05262},
  year = {2019}
}

@article{alarcon2010congruence,
  author = {Alarcón, Ruben},
  title = {Congruence between visitation and pollen-transport networks in a California plant–pollinator community},
  journal = {Oikos},
  volume = {119},
  number = {1},
  pages = {35-44},
  doi = {https://doi.org/10.1111/j.1600-0706.2009.17694.x},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1600-0706.2009.17694.x},
  eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1600-0706.2009.17694.x},
  year = {2010}
}

@article{sarro2022bumble,
  title={Bumble Bee (Bombus vosnesenskii) Queen Nest Searching Occurs Independent of Ovary Developmental Status},
  author={Sarro, Erica and Tripodi, Amber and Woodard, S Hollis},
  journal={Integrative Organismal Biology},
  volume={4},
  number={1},
  pages={obac007},
  year={2022},
  publisher={Oxford University Press}
}

@article{williams1982distribution,
  author = {Paul H. Williams},
  title = {The Distribution and Decline of British Bumble Bees (Bombus Latr.)},
  journal = {Journal of Apicultural Research},
  volume = {21},
  number = {4},
  pages = {236-245},
  year  = {1982},
  publisher = {Taylor & Francis},
  doi = {10.1080/00218839.1982.11100549},
  URL = {https://doi.org/10.1080/00218839.1982.11100549},
  eprint = {https://doi.org/10.1080/00218839.1982.11100549}
}

@article{colla2012assessing,
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@article{duffy2007functional,
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@article{tylianakis2010conservation,
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@article{liu2022environmental,
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@article{hengl2017soilgrids250m,
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 @Manual{kassambara2023rstatix,
    title = {rstatix: Pipe-Friendly Framework for Basic Statistical Tests},
    author = {Alboukadel Kassambara},
    year = {2023},
    note = {R package version 0.7.2},
    url = {https://CRAN.R-project.org/package=rstatix},
  }
  
   @Article{Hothorn2006coin,
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    year = {2006},
    volume = {60},
    number = {3},
    pages = {257--263},
    doi = {10.1198/000313006X118430},
  }

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