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fides

Trust Region Optimization in Python

https://github.com/fides-dev/fides

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.0%) to scientific vocabulary

Keywords

hacktoberfest optimization optimization-algorithms optimizer python trust-region trust-region-methods trust-region-optimization
Last synced: 6 months ago · JSON representation ·

Repository

Trust Region Optimization in Python

Basic Info
  • Host: GitHub
  • Owner: fides-dev
  • License: other
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 162 KB
Statistics
  • Stars: 27
  • Watchers: 2
  • Forks: 4
  • Open Issues: 4
  • Releases: 34
Topics
hacktoberfest optimization optimization-algorithms optimizer python trust-region trust-region-methods trust-region-optimization
Created over 5 years ago · Last pushed over 2 years ago
Metadata Files
Readme License Citation

README.md

Fides - A python package for Trust Region Optimization

PyPI version Code coverage ReadTheDocs status DOI

About Fides

Fides implements an Interior Trust Region Reflective for boundary constrained optimization problems based on the papers ColemanLi1994 and ColemanLi1996. Accordingly, Fides is named after the Roman goddess of trust and reliability.

Fides can be installed via pip install fides. Further documentation is available at Read the Docs.

Features

  • Boundary constrained and unconstrained interior trust-region optimization
  • Reflective, truncated and optimization based boundary heuristics
  • Exact, 2D and CG subproblem solvers
  • BFGS, DFP, SR1, Broyden (good and bad) and Broyden class iterative Hessian Approximation schemes
  • SSM, TSSM, FX, GNSBFGS and custom hybrid Hessian Approximations schemes

Owner

  • Name: fides-dev
  • Login: fides-dev
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Froehlich"
  given-names: "Fabian"
  orcid: "https://orcid.org/0000-0003-2387-9495"
- family-names: "Weindl"
  given-names: "Daniel"
  orcid: "https://orcid.org/0000-0001-9963-6057"
title: "Fides"
doi: 10.5281/zenodo.5556023
date-released: 2021-10-07
url: "https://github.com/fides/fides"
preferred-citation:
  type: article
  authors:
  - family-names: "Froehlich"
    given-names: "Fabian"
    orcid: "https://orcid.org/0000-0003-2387-9495"
  - family-names: "Sorger"
    given-names: "Peter K."
    orcid: "https://orcid.org/0000-0002-3364-1838"
  doi: "10.1101/2021.05.20.4450650"
  journal: "bioRxiv"
  month: 5
  title: "Fides: Reliable Trust-Region Optimization for Parameter Estimation of Ordinary Differential Equation Models"
  year: 2021

GitHub Events

Total
  • Watch event: 3
Last Year
  • Watch event: 3

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 18
  • Total pull requests: 39
  • Average time to close issues: 14 days
  • Average time to close pull requests: about 10 hours
  • Total issue authors: 6
  • Total pull request authors: 3
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.92
  • Merged pull requests: 38
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • FFroehlich (11)
  • yannikschaelte (2)
  • roecla (2)
  • paulstapor (1)
  • jvanhoefer (1)
  • dweindl (1)
Pull Request Authors
  • FFroehlich (35)
  • dweindl (3)
  • drhagen (1)
Top Labels
Issue Labels
enhancement (4) bug (3) documentation (2)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 3,195 last-month
  • Total dependent packages: 2
  • Total dependent repositories: 4
  • Total versions: 33
  • Total maintainers: 1
pypi.org: fides

python-based Trust Region Optimization toolbox

  • Versions: 33
  • Dependent Packages: 2
  • Dependent Repositories: 4
  • Downloads: 3,195 Last month
Rankings
Dependent packages count: 3.1%
Dependent repos count: 7.5%
Downloads: 7.7%
Average: 9.5%
Stargazers count: 13.9%
Forks count: 15.3%
Maintainers (1)
ffroehlich
Last synced: 6 months ago

Dependencies

docs/requirements.txt pypi
  • h5py >=3.5.0
  • nbsphinx >=0.5.1
  • numpy >=1.19.2
  • numpydoc >=0.6
  • pygments ==2.4.1
  • recommonmark >=0.6.0
  • scipy >=1.5.2
  • sphinx >=1.4
  • sphinx-autodoc-typehints >=1.10.3
  • sphinx_rtd_theme >=0.4.3
  • sphinxcontrib-napoleon *
.github/workflows/deploy_release.yaml actions
  • actions/checkout v1 composite
  • pypa/gh-action-pypi-publish master composite
.github/workflows/flake.yaml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
  • suo/flake8-github-action releases/v1 composite
.github/workflows/tests.yaml actions
  • actions/checkout v1 composite
  • actions/setup-python v2 composite
  • codecov/codecov-action v1 composite
pyproject.toml pypi