Data

Tools

Indexes

Applications

Experiments

Open Source Science

transrate

transrate packaging

https://salsa.debian.org/ruby-team/attic/transrate

Science Score: 31.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.7%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

transrate packaging

Basic Info
  • Host: salsa.debian.org
  • Owner: ruby-team
  • License: mit
  • Default Branch: master
Statistics
  • Stars: 0
  • Forks: 0
  • Open Issues:
  • Releases: 0
Created over 8 years ago
Metadata Files
Readme License Citation

README.md

Transrate - understand your transcriptome assembly

Download latest binaries: Download

Need help? Chat to us live: Gitter

Development status

Gem Version Downloads Total Downloads Build Status Dependency Status Code Climate Coverage Status

This software is being actively developed. Please be aware that there may be bugs. If you find any, please report them on the issue tracker.

Citation

Transrate is pre-publication academic software. If you use it, please cite the preprint on biorXiv.

Documentation

transrate is documented on the website.

Contributing

Interested in helping? Great! We particularly would like help with the following:

  • code review
  • documentation review
  • adding features that are already discussed and approved on the issue tracker
  • tackling bugs

For any of these, please just pick an appropriate issue on the tracker and make a pull request.

If you want to suggest, and maybe implement, a new feature, please suggest it on the tracker first. This allows us to give feedback on whether it makes sense given the scope of the software, and for the community to discuss requirements for the feature. Don't just implement the feature and make a pull request before dicussing it, because you'll probably find your PR waiting a very long time for review.

Owner

  • Name: Debian Ruby Team
  • Login: ruby-team
  • Kind: organization

The Debian Ruby Team maintains Ruby software in Debian. This includes the interpreters, libraries and applications. Various scripts used by the team are gathered in the `meta` repository. Clone it and run `./checkout` to clone other repositories.

Citation (CITATION) 

To cite transrate in publications, please use:

Smith-Unna, Richard D.; Boursnell, Chris M.; Hibberd, Julian M. and Kelly, Steven (2014). Transrate: v1.0.0 beta 1. Github: https://github.com/Blahah/transrate. 10.5281/zenodo.13161

Issues and Pull Requests

Last synced: 10 months ago

Dependencies

transrate.gemspec rubygems
  • coveralls ~> 0.7, >= 0.7.2 development
  • minitest ~> 5 development
  • minitest-reporters ~> 1, >= 1.0.17 development
  • rake ~> 10.3, >= 10.3.2 development
  • rake-compiler ~> 0.9, >= 0.9.2 development
  • shoulda ~> 3.5, >= 3.5.0 development
  • simplecov ~> 0.8, >= 0.8.2 development
  • test-unit ~> 3.0 development
  • bindeps ~> 1.1, >= 1.1.2
  • bio ~> 1.4, >= 1.4.3
  • colorize ~> 0.7, >= 0.7.7
  • crb-blast ~> 0.6, >= 0.6.4
  • fix-trinity-output ~> 1.0, >= 1.0
  • trollop ~> 2.0, >= 2.0.0
  • yell ~> 2.0, >= 2.0.4