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thalamocortical

GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005

https://github.com/opensourcebrain/thalamocortical

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
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    DOI references
  • ✓
    Academic publication links
    Links to: ncbi.nlm.nih.gov, zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005

Basic Info
Statistics
  • Stars: 9
  • Watchers: 5
  • Forks: 14
  • Open Issues: 3
  • Releases: 0
Created over 13 years ago · Last pushed 6 months ago
Metadata Files
Readme License Citation Authors

README.md

Thalamocortical network model of Traub et al. 2005

Continuous build using OMV

This is a project implementing cells from the thalamocortical network model of Traub et al. 2005 in NeuroML.

Based on the NEURON implementation from: http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=45539.

See http://www.opensourcebrain.org/projects/thalamocortical for more details.

A number of authors have contributed to the various implementations of this model in different simulators. See here for details.

This project was contributed to by Rokas Stanislovas as part of the 2016 Google Summer of Code. He worked on the conversion and testing of cell models to NeuroML2 and the creation of Python scripts to generate versions of the column. See here for more details.

DOI

Reusing this model

The code in this repository is provided under the terms of the software license included with it. If you use this model in your research, we respectfully ask you to cite the references outlined in the CITATION file.

Owner

  • Name: OpenSourceBrain
  • Login: OpenSourceBrain
  • Kind: organization

Citation (CITATION.md) 

## Citing this model

The software in this repository is provided under the terms of the [software license](LICENSE) included with it. 

If you use this model in your research, we respectfully ask you to cite:

**The original publication upon which this model is based**

   - Traub RD, Contreras D, Cunningham MO, Murray H, Lebeau FE, Roopun A, Bibbig A, et al (2005) A single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles and epileptogenic bursts J Neurophysiol 93(4):2194-232

**The ModelDB entry for this model**

  - http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=45539

**The latest release of this Open Source Brain repository**

   - This link should provide a DOI/citation for the latest version released: https://www.zenodo.org/badge/latestdoi/4960904. If you would like us to make a new release, please [open an issue](../../issues).

GitHub Events

Total
  • Push event: 2
  • Pull request event: 1
  • Fork event: 1
Last Year
  • Push event: 2
  • Pull request event: 1
  • Fork event: 1

Dependencies

.github/workflows/omv-ci.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite