causal-inference-in-r

Causal Inference in R: A book!

https://github.com/r-causal/causal-inference-in-r

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Repository

Causal Inference in R: A book!

Basic Info
  • Host: GitHub
  • Owner: r-causal
  • License: other
  • Language: TeX
  • Default Branch: main
  • Homepage: https://www.r-causal.org/
  • Size: 43.3 MB
Statistics
  • Stars: 227
  • Watchers: 13
  • Forks: 65
  • Open Issues: 100
  • Releases: 0
Created about 5 years ago · Last pushed 8 months ago
Metadata Files
Readme License Citation

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# Causal Inference in R





This repository contains the source code for the book *Causal Inference in R.*

## Installation

After cloning this repository, you can install the package dependencies for this book with:

``` r
# install.packages("remotes")
remotes::install_deps(dependencies = TRUE)
```

We use [Quarto](https://quarto.org/) to render this book.

Owner

  • Name: r-causal
  • Login: r-causal
  • Kind: organization

Citation (citations.bib)

@article{greifer2021choosing,
  title={Choosing the Estimand When Matching or Weighting in Observational Studies},
  author={Greifer, Noah and Stuart, Elizabeth A},
  journal={arXiv preprint arXiv:2106.10577},
  year={2021}
}

@article{lucy2022tipr,
  title={tipr: An R package for sensitivity analyses for unmeasured confounders},
  author={Lucy, D and McGowan, Agostino},
  journal={Journal of Open Source Software},
  volume={7},
  number={77},
  pages={4495},
  year={2022}
}

@misc{Riederer_2020, 
  title={Column names as contracts}, 
  url={https://emilyriederer.netlify.app/post/column-name-contracts/}, 
  journal={Emily Riederer}, 
  publisher={Emily Riederer}, 
  author={Riederer, Emily}, 
  year={2020}, 
  month={Sep}} 

@misc{mcgowan2023causal,
      title={Causal inference is not just a statistics problem}, 
      author={Lucy D'Agostino McGowan and Travis Gerke and Malcolm Barrett},
      year={2023},
      eprint={2304.02683},
      archivePrefix={arXiv},
      primaryClass={stat.ME}
}

@article{godtfredsen2005effect,
  title={Effect of smoking reduction on lung cancer risk},
  author={Godtfredsen, Nina S and Prescott, Eva and Osler, Merete},
  journal={Jama},
  volume={294},
  number={12},
  pages={1505--1510},
  year={2005},
  publisher={American Medical Association}
}

@article{hernan2016using,
  title={Using big data to emulate a target trial when a randomized trial is not available},
  author={Hern{\'a}n, Miguel A and Robins, James M},
  journal={American journal of epidemiology},
  volume={183},
  number={8},
  pages={758--764},
  year={2016},
  publisher={Oxford University Press}
}
  
@book{split,
  title={Split Decision: Life Stories},
  author={Century, D.},
  isbn={9781982148799},
  lccn={2022003439},
  url={https://books.google.com/books?id=bN9IEAAAQBAJ},
  year={2022},
  publisher={Gallery Books}
}


@book{imbens2015causal,
  title={Causal inference in statistics, social, and biomedical sciences},
  author={Imbens, Guido W and Rubin, Donald B},
  year={2015},
  publisher={Cambridge University Press}
}

@article{rubin1974estimating,
  title={Estimating causal effects of treatments in randomized and nonrandomized studies.},
  author={Rubin, Donald B},
  journal={Journal of educational Psychology},
  volume={66},
  number={5},
  pages={688},
  year={1974},
  publisher={American Psychological Association}
}


@article{williamson2014variance,
  title={Variance reduction in randomised trials by inverse probability weighting using the propensity score},
  author={Williamson, Elizabeth J and Forbes, Andrew and White, Ian R},
  journal={Statistics in medicine},
  volume={33},
  number={5},
  pages={721--737},
  year={2014},
  publisher={Wiley Online Library}
}
@phdthesis{d2018improving,
  title={Improving Modern Techniques of Causal Inference: Finite Sample Performance of ATM and ATO Doubly Robust Estimators, Variance Estimation for ATO Estimators, and Contextualized Tipping Point Sensitivity Analyses for Unmeasured Confounding},
  author={D'Agostino McGowan, Lucy},
  year={2018}
}
@book{samuels2017aspects,
  title={Aspects of Causal Inference within the Evenly Matchable Population: The Average Treatment Effect on the Evenly Matchable Units, Visually Guided Cohort Selection, and Bagged One-to-One Matching},
  author={Samuels, Lauren Ruth},
  year={2017},
  publisher={Vanderbilt University}
}
@article{rosenbaum1983central,
  title={The central role of the propensity score in observational studies for causal effects},
  author={Rosenbaum, Paul R and Rubin, Donald B},
  journal={Biometrika},
  volume={70},
  number={1},
  pages={41--55},
  year={1983},
  publisher={Oxford University Press}
}
@article{DingMiratrix2015,
author = {Peng Ding and Luke W. Miratrix},
doi = {doi:10.1515/jci-2013-0021},
url = {https://doi.org/10.1515/jci-2013-0021},
title = {To Adjust or Not to Adjust? Sensitivity Analysis of M-Bias and Butterfly-Bias},
journal = {Journal of Causal Inference},
number = {1},
volume = {3},
year = {2015},
pages = {41--57}
}
@book{hernan2021,
	title = {Causal Inference: What If?},
	author = {{Hernán}, M. A. and Robins, J. M.},
	year = {2021},
	date = {2021},
	publisher = {Chapman Hall/CRC},
	address = {Boca Raton}
}



@article{Myers2011,
	title = {Effects of Adjusting for Instrumental Variables on Bias and Precision of Effect Estimates},
	author = {Myers, Jessica A. and Rassen, Jeremy A. and Gagne, Joshua J. and Huybrechts, Krista F. and Schneeweiss, Sebastian and Rothman, Kenneth J. and Joffe, Marshall M. and Glynn, Robert J.},
	year = {2011},
	month = {10},
	date = {2011-10-24},
	journal = {American Journal of Epidemiology},
	pages = {1213--1222},
	volume = {174},
	number = {11},
	doi = {10.1093/aje/kwr364},
	url = {http://dx.doi.org/10.1093/aje/kwr364},
	langid = {en}
}

@article{gettleman2015,
	title = {Meant to Keep Malaria Out, Mosquito Nets Are Used to Haul Fish In},
	author = {Gettleman, Jeffrey},
	year = {2015},
	month = {01},
	date = {2015-01-24},
	journal = {The New York Times},
	url = {https://www.nytimes.com/2015/01/25/world/africa/mosquito-nets-for-malaria-spawn-new-epidemic-overfishing.html},
	langid = {canadian}
}

@misc{thehist,
	title = {The History of {Herodotus}},
	author = {Macaulay, G. C.},
	year = "2008",
	url = {https://www.gutenberg.org/files/2707/2707-h/2707-h.htm}
}


@article{cohen2010,
	title = {Free Distribution or Cost-Sharing? Evidence from a Randomized Malaria Prevention Experiment*},
	author = {Cohen, Jessica and Dupas, Pascaline},
	year = {2010},
	month = {02},
	date = {2010-02-01},
	journal = {The Quarterly Journal of Economics},
	pages = {1--45},
	volume = {125},
	number = {1},
	doi = {10.1162/qjec.2010.125.1.1},
	url = {https://doi.org/10.1162/qjec.2010.125.1.1}
}

@Article{haber_causal_language,
   Author="Haber, N. A.  and Wieten, S. E.  and Rohrer, J. M.  and Arah, O. A.  and Tennant, P. W. G.  and Stuart, E. A.  and Murray, E. J.  and Pilleron, S.  and Lam, S. T.  and Riederer, E.  and Howcutt, S. J.  and Simmons, A. E.  and Leyrat, C.  and Schoenegger, P.  and Booman, A.  and Dufour, M. K.  and O'Donoghue, A. L.  and Baglini, R.  and Do, S.  and Takashima, M. R.  and Evans, T. R.  and Rodriguez-Molina, D.  and Alsalti, T. M.  and Dunleavy, D. J.  and Meyerowitz-Katz, G.  and Antonietti, A.  and Calvache, J. A.  and Kelson, M. J.  and Salvia, M. G.  and Parra, C. O.  and Khalatbari-Soltani, S.  and McLinden, T.  and Chatton, A.  and Seiler, J.  and Steriu, A.  and Alshihayb, T. S.  and Twardowski, S. E.  and Dabravolskaj, J.  and Au, E.  and Hoopsick, R. A.  and Suresh, S.  and Judd, N.  and a, S.  and Axfors, C.  and Khan, P.  and Rivera Aguirre, A. E.  and Odo, N. U.  and Schmid, I.  and Fox, M. P. ",
   Title="{{C}ausal and {A}ssociational {L}anguage in {O}bservational {H}ealth {R}esearch: {A} {S}ystematic {E}valuation}",
   Journal="Am J Epidemiol",
   Year="2022",
   Volume="191",
   Number="12",
   Pages="2084--2097",
   Month="Nov"
}

@article{lengeler2004,
	title = {Insecticide-treated bed nets and curtains for preventing malaria},
	author = {Lengeler, C.},
	year = {2004},
	date = {2004},
	journal = {The Cochrane Database of Systematic Reviews},
	pages = {CD000363},
	number = {2},
	doi = {10.1002/14651858.CD000363.pub2},
	note = {PMID: 15106149},
	langid = {eng}
}

@article{pryce2018,
	title = {Insecticide{-}treated nets for preventing malaria},
	author = {Pryce, Joseph and Richardson, Marty and Lengeler, Christian},
	year = {2018},
	date = {2018},
	journal = {Cochrane Database of Systematic Reviews},
	number = {11},
	doi = {10.1002/14651858.CD000363.pub3},
	url = {https://www.cochranelibrary.com/cdsr/doi/10.1002/14651858.CD000363.pub3/full},
	note = {Publisher: John Wiley & Sons, Ltd},
	langid = {en}
}

@misc{worldma,
	title = {World malaria report},
	year = {2021},
	url = {https://www.who.int/teams/global-malaria-programme/reports/world-malaria-report-2021},
	langid = {en}
}

@article{howard2000,
	title = {Evidence for a mass community effect of insecticide-treated bednets on the incidence of malaria on the Kenyan coast},
	author = {Howard, S. C. and Omumbo, J. and Nevill, C. and Some, E. S. and Donnelly, C. A. and Snow, R. W.},
	year = {2000},
	month = {08},
	date = {2000-08},
	journal = {Transactions of the Royal Society of Tropical Medicine and Hygiene},
	pages = {357--360},
	volume = {94},
	number = {4},
	doi = {10.1016/s0035-9203(00)90103-2},
	note = {PMID: 11127232},
	langid = {eng}
}

@article{nevill1996,
	title = {Insecticide-treated bednets reduce mortality and severe morbidity from malaria among children on the Kenyan coast},
	author = {Nevill, C. G. and Some, E. S. and {Mung'ala}, V. O. and Mutemi, W. and New, L. and Marsh, K. and Lengeler, C. and Snow, R. W.},
	year = {1996},
	month = {04},
	date = {1996-04},
	journal = {Tropical medicine & international health: TM & IH},
	pages = {139--146},
	volume = {1},
	number = {2},
	doi = {10.1111/j.1365-3156.1996.tb00019.x},
	note = {PMID: 8665377},
	langid = {eng}
}

@article{hawley2003,
	title = {Community-wide effects of permethrin-treated bed nets on child mortality and malaria morbidity in western Kenya},
	author = {Hawley, William A. and Phillips-Howard, Penelope A. and ter Kuile, Feiko O. and Terlouw, Dianne J. and Vulule, John M. and Ombok, Maurice and Nahlen, Bernard L. and Gimnig, John E. and Kariuki, Simon K. and Kolczak, Margarette S. and Hightower, Allen W.},
	year = {2003},
	month = {04},
	date = {2003-04},
	journal = {The American Journal of Tropical Medicine and Hygiene},
	pages = {121--127},
	volume = {68},
	number = {4 Suppl},
	note = {PMID: 12749495},
	langid = {eng}
}

@article{arama2015,
	title = {Genetic Resistance to Malaria Is Associated With Greater Enhancement of Immunoglobulin (Ig)M Than IgG Responses to a Broad Array of Plasmodium falciparum Antigens},
	author = {Arama, Charles and Skinner, Jeff and Doumtabe, Didier and Portugal, Silvia and Tran, Tuan M. and Jain, Aarti and Traore, Boubacar and Doumbo, Ogobara K. and Davies, David Huw and Troye-Blomberg, Marita and Dolo, Amagana and Felgner, Philip L. and Crompton, Peter D.},
	year = {2015},
	month = {09},
	date = {2015-09},
	journal = {Open Forum Infectious Diseases},
	pages = {ofv118},
	volume = {2},
	number = {3},
	doi = {10.1093/ofid/ofv118},
	note = {PMID: 26361633
PMCID: PMC4564391},
	langid = {eng}
}

@article{Hernan2018,
	title = {The C-Word: Scientific Euphemisms Do Not Improve Causal Inference From Observational Data},
	author = {{Hernán}, Miguel A.},
	year = {2018},
	month = {05},
	date = {2018-05},
	journal = {American Journal of Public Health},
	pages = {616--619},
	volume = {108},
	number = {5},
	doi = {10.2105/ajph.2018.304337},
	url = {http://dx.doi.org/10.2105/AJPH.2018.304337},
	langid = {en}
}

@article{hernan2019,
	title = {A Second Chance to Get Causal Inference Right: A Classification of Data Science Tasks},
	author = {{Hernán}, Miguel A. and Hsu, John and Healy, Brian},
	year = {2019},
	month = {01},
	date = {2019-01-02},
	journal = {CHANCE},
	pages = {42--49},
	volume = {32},
	number = {1},
	doi = {10.1080/09332480.2019.1579578},
	url = {http://dx.doi.org/10.1080/09332480.2019.1579578},
	langid = {en}
}

@article{owidforestsanddeforestation,
    author = {Hannah Ritchie and Max Roser},
    title = {Forests and Deforestation},
    journal = {Our World in Data},
    year = {2021},
    note = {https://ourworldindata.org/forests-and-deforestation}
}

@article{Miller2004,
	title = {Prevalence of Chlamydial and Gonococcal Infections Among Young Adults in the United States},
	author = {Miller, William C.},
	year = {2004},
	month = {05},
	date = {2004-05-12},
	journal = {JAMA},
	pages = {2229},
	volume = {291},
	number = {18},
	doi = {10.1001/jama.291.18.2229},
	url = {http://dx.doi.org/10.1001/jama.291.18.2229},
	langid = {en}
}

@article{Gartner2020,
	title = {Integrating Surveillance Data to Estimate Race/Ethnicity-specific Hysterectomy Inequalities Among Reproductive-aged Women},
	author = {Gartner, Danielle R. and Delamater, Paul L. and Hummer, Robert A. and Lund, Jennifer L. and Pence, Brian W. and Robinson, Whitney R.},
	year = {2020},
	month = {05},
	date = {2020-05},
	journal = {Epidemiology},
	pages = {385--392},
	volume = {31},
	number = {3},
	doi = {10.1097/ede.0000000000001171},
	url = {http://dx.doi.org/10.1097/EDE.0000000000001171},
	langid = {en}
}

@article{Westreich2013,
	title = {The Table 2 Fallacy: Presenting and Interpreting Confounder and Modifier Coefficients},
	author = {Westreich, D. and Greenland, S.},
	year = {2013},
	month = {01},
	date = {2013-01-30},
	journal = {American Journal of Epidemiology},
	pages = {292--298},
	volume = {177},
	number = {4},
	doi = {10.1093/aje/kws412},
	url = {http://dx.doi.org/10.1093/aje/kws412},
	langid = {en}
}


@article{shmueli2010a,
	title = {To Explain or to Predict?},
	author = {Shmueli, Galit},
	year = {2010},
	month = {08},
	date = {2010-08-01},
	journal = {Statistical Science},
	volume = {25},
	number = {3},
	doi = {10.1214/10-sts330},
	url = {http://dx.doi.org/10.1214/10-sts330}
}

@book{kuhn2013a,
	title = {Applied Predictive Modeling},
	author = {Kuhn, Max and Johnson, Kjell},
	year = {2013},
	date = {2013},
	publisher = {Springer New York},
	doi = {10.1007/978-1-4614-6849-3},
	url = {http://dx.doi.org/10.1007/978-1-4614-6849-3}
}

@book{harrell2001,
	title = {Multivariable Modeling Strategies},
	author = {Harrell, Frank E.},
	year = {2001},
	date = {2001},
	publisher = {Springer New York},
	doi = {10.1007/978-1-4757-3462-1_4},
	url = {http://dx.doi.org/10.1007/978-1-4757-3462-1_4}
}

@book{Kuhn_Silge_2022, title={Tidy modeling with R: A framework for modeling in the Tidyverse}, publisher={O’Reilly}, author={Kuhn, Max and Silge, Julia}, year={2022}} 

@book{James_Witten_Hastie_Tibshirani_2022, place={Boston}, title={An introduction to statistical learning: With applications in R}, publisher={Springer}, author={James, Gareth and Witten, Daniela and Hastie, Trevor and Tibshirani, Robert}, year={2022}} 

@article{steck2021,
	title = {Deep learning for recommender systems: A Netflix case study},
	author = {Steck, Harald and Baltrunas, Linas and Elahi, Ehtsham and Liang, Dawen and Raimond, Yves and Basilico, Justin},
	year = {2021},
	month = {09},
	date = {2021-09},
	journal = {AI Magazine},
	pages = {7--18},
	volume = {42},
	number = {3},
	doi = {10.1609/aimag.v42i3.18140},
	url = {http://dx.doi.org/10.1609/aimag.v42i3.18140},
	langid = {en}
}

@article{Wynants2020,
	title = {Prediction models for diagnosis and prognosis of covid-19: systematic review and critical appraisal},
	author = {Wynants, Laure and Van Calster, Ben and Collins, Gary S and Riley, Richard D and Heinze, Georg and Schuit, Ewoud and Albu, Elena and Arshi, Banafsheh and Bellou, Vanesa and Bonten, Marc M J and Dahly, Darren L and Damen, Johanna A and Debray, Thomas P A and de Jong, Valentijn M T and De Vos, Maarten and Dhiman, Paula and Ensor, Joie and Gao, Shan and Haller, Maria C and Harhay, Michael O and Henckaerts, Liesbet and Heus, Pauline and Hoogland, Jeroen and Hudda, Mohammed and Jenniskens, Kevin and Kammer, Michael and Kreuzberger, Nina and Lohmann, Anna and Levis, Brooke and Luijken, Kim and Ma, Jie and Martin, Glen P and McLernon, David J and Navarro, Constanza L Andaur and Reitsma, Johannes B and Sergeant, Jamie C and Shi, Chunhu and Skoetz, Nicole and Smits, Luc J M and Snell, Kym I E and Sperrin, Matthew and Spijker, {René} and Steyerberg, Ewout W and Takada, Toshihiko and Tzoulaki, Ioanna and van Kuijk, Sander M J and van Bussel, Bas C T and van der Horst, Iwan C C and Reeve, Kelly and van Royen, Florien S and Verbakel, Jan Y and Wallisch, Christine and Wilkinson, Jack and Wolff, Robert and Hooft, Lotty and Moons, Karel G M and van Smeden, Maarten},
	year = {2020},
	month = {04},
	date = {2020-04-07},
	journal = {BMJ},
	pages = {m1328},
	doi = {10.1136/bmj.m1328},
	url = {http://dx.doi.org/10.1136/bmj.m1328},
	langid = {en}
}

@article{Gupta2021,
	title = {Development and validation of the ISARIC 4C Deterioration model for adults hospitalised with COVID-19: a prospective cohort study},
	author = {Gupta, Rishi K and Harrison, Ewen M and Ho, Antonia and Docherty, Annemarie B and Knight, Stephen R and van Smeden, Maarten and Abubakar, Ibrahim and Lipman, Marc and Quartagno, Matteo and Pius, Riinu and Buchan, Iain and Carson, Gail and Drake, Thomas M and Dunning, Jake and Fairfield, Cameron J and Gamble, Carrol and Green, Christopher A and Halpin, Sophie and Hardwick, Hayley E and Holden, Karl A and Horby, Peter W and Jackson, Clare and Mclean, Kenneth A and Merson, Laura and Nguyen-Van-Tam, Jonathan S and Norman, Lisa and Olliaro, Piero L and Pritchard, Mark G and Russell, Clark D and Scott-Brown, James and Shaw, Catherine A and Sheikh, Aziz and Solomon, Tom and Sudlow, Cathie and Swann, Olivia V and Turtle, Lance and Openshaw, Peter J M and Baillie, J Kenneth and Semple, Malcolm G and Noursadeghi, Mahdad and Baillie, J Kenneth and Semple, Malcolm G and Openshaw, Peter JM and Carson, Gail and Alex, Beatrice and Bach, Benjamin and Barclay, Wendy S and Bogaert, Debby and Chand, Meera and Cooke, Graham S and Docherty, Annemarie B and Dunning, Jake and Filipe, Ana da Silva and Fletcher, Tom and Green, Christopher A and Harrison, Ewen M and Hiscox, Julian A and Ho, Antonia Ying Wai and Horby, Peter W and Ijaz, Samreen and Khoo, Saye and Klenerman, Paul and Law, Andrew and Lim, Wei Shen and Mentzer, Alexander J and Merson, Laura and Meynert, Alison M and Noursadeghi, Mahdad and Moore, Shona C and Palmarini, Massimo and Paxton, William A and Pollakis, Georgios and Price, Nicholas and Rambaut, Andrew and Robertson, David L and Russell, Clark D and Sancho-Shimizu, Vanessa and Scott, Janet T and de Silva, Thushan and Sigfrid, Louise and Solomon, Tom and Sriskandan, Shiranee and Stuart, David and Summers, Charlotte and Tedder, Richard S and Thomson, Emma C and Thompson, AA Roger and Thwaites, Ryan S and Turtle, Lance CW and Zambon, Maria and Hardwick, Hayley and Donohue, Chloe and Lyons, Ruth and Griffiths, Fiona and Oosthuyzen, Wilna and Norman, Lisa and Pius, Riinu and Drake, Tom M and Fairfield, Cameron J and Knight, Stephen and Mclean, Kenneth A and Murphy, Derek and Shaw, Catherine A and Dalton, Jo and Lee, James and Plotkin, Daniel and Girvan, Michelle and Mullaney, Scott and Petersen, Claire and Saviciute, Egle and Roberts, Stephanie and Harrison, Janet and Marsh, Laura and Connor, Marie and Halpin, Sophie and Jackson, Clare and Gamble, Carrol and Leeming, Gary and Law, Andrew and Wham, Murray and Clohisey, Sara and Hendry, Ross and Scott-Brown, James and Greenhalf, William and Shaw, Victoria and McDonald, Sarah and Keating, {Seán} and Ahmed, Katie A. and Armstrong, Jane A and Ashworth, Milton and Asiimwe, Innocent G and Bakshi, Siddharth and Barlow, Samantha L and Booth, Laura and Brennan, Benjamin and Bullock, Katie and Catterall, Benjamin WA and Clark, Jordan J and Clarke, Emily A and Cole, Sarah and Cooper, Louise and Cox, Helen and Davis, Christopher and Dincarslan, Oslem and Dunn, Chris and Dyer, Philip and Elliott, Angela and Evans, Anthony and Finch, Lorna and Fisher, Lewis WS and Foster, Terry and Garcia-Dorival, Isabel and Greenhalf, Willliam and Gunning, Philip and Hartley, Catherine and Ho, Antonia and Jensen, Rebecca L and Jones, Christopher B and Jones, Trevor R and Khandaker, Shadia and King, Katharine and Kiy, Robyn T. and Koukorava, Chrysa and Lake, Annette and Lant, Suzannah and Latawiec, Diane and Lavelle-Langham, L and Lefteri, Daniella and Lett, Lauren and Livoti, Lucia A and Mancini, Maria and McDonald, Sarah and McEvoy, Laurence and McLauchlan, John and Metelmann, Soeren and Miah, Nahida S and Middleton, Joanna and Mitchell, Joyce and Moore, Shona C and Murphy, Ellen G and Penrice-Randal, Rebekah and Pilgrim, Jack and Prince, Tessa and Reynolds, Will and Ridley, P. Matthew and Sales, Debby and Shaw, Victoria E and Shears, Rebecca K and Small, Benjamin and Subramaniam, Krishanthi S and Szemiel, Agnieska and Taggart, Aislynn and Tanianis-Hughes, Jolanta and Thomas, Jordan and Trochu, Erwan and van Tonder, Libby and Wilcock, Eve and Zhang, J. 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@misc{murray2022,
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  Address                  = {Boca Raton, Florida, USA},
  Number                   = {57},
  Series                   = {Monographs on Statistics and Applied Probability}
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	title = {Noncollapsibility, confounding, and sparse-data bias. Part 2: What should researchers make of persistent controversies about the odds ratio?},
	author = {Greenland, Sander},
	year = {2021},
	month = {11},
	date = {2021-11},
	journal = {Journal of Clinical Epidemiology},
	pages = {264--268},
	volume = {139},
	doi = {10.1016/j.jclinepi.2021.06.004},
	url = {http://dx.doi.org/10.1016/j.jclinepi.2021.06.004},
	langid = {en}
}

@article{Huitfeldt2019,
	title = {On the collapsibility of measures of effect in the counterfactual causal framework},
	author = {Huitfeldt, Anders and Stensrud, Mats J. and Suzuki, Etsuji},
	year = {2019},
	month = {01},
	date = {2019-01-07},
	journal = {Emerging Themes in Epidemiology},
	volume = {16},
	number = {1},
	doi = {10.1186/s12982-018-0083-9},
	url = {http://dx.doi.org/10.1186/s12982-018-0083-9},
	langid = {en}
}

@article{Whitcomb2021,
	title = {Defining, Quantifying, and Interpreting {\textquotedblleft}Noncollapsibility{\textquotedblright} in Epidemiologic Studies of Measures of {\textquotedblleft}Effect{\textquotedblright}},
	author = {Whitcomb, Brian W and Naimi, Ashley I},
	year = {2020},
	month = {12},
	date = {2020-12-11},
	journal = {American Journal of Epidemiology},
	pages = {697--700},
	volume = {190},
	number = {5},
	doi = {10.1093/aje/kwaa267},
	url = {http://dx.doi.org/10.1093/aje/kwaa267},
	langid = {en}
}

@misc{Gelman_2017, 
  title={What is “overfitting,” exactly?}, 
  url={https://statmodeling.stat.columbia.edu/2017/07/15/what-is-overfitting-exactly/}, 
  journal={Statistical Modeling, Causal Inference, and Social Science}, author={Gelman, Andrew},
  year={2017}, 
  month={Jul}
} 

@misc{zivich2022positivity,
      title={Positivity: Identifiability and Estimability}, 
      author={Paul N Zivich and Stephen R Cole and Daniel Westreich},
      year={2022},
      eprint={2207.05010},
      archivePrefix={arXiv},
      primaryClass={stat.ME},
      url={https://arxiv.org/abs/2207.05010}, 
}

@article{schuster2016,
	title = {Propensity score model overfitting led to inflated variance of estimated odds ratios},
	author = {Schuster, Tibor and Lowe, Wilfrid Kouokam and Platt, Robert W.},
	year = {2016},
	month = {12},
	date = {2016-12},
	journal = {Journal of Clinical Epidemiology},
	pages = {97--106},
	volume = {80},
	doi = {10.1016/j.jclinepi.2016.05.017},
	url = {http://dx.doi.org/10.1016/j.jclinepi.2016.05.017},
	langid = {en}
}

@article{Tchetgen2012,
	title = {On causal inference in the presence of interference},
	author = {Tchetgen, Eric J Tchetgen and VanderWeele, Tyler J},
	year = {2010},
	month = {11},
	date = {2010-11-10},
	journal = {Statistical Methods in Medical Research},
	pages = {55--75},
	volume = {21},
	number = {1},
	doi = {10.1177/0962280210386779},
	url = {http://dx.doi.org/10.1177/0962280210386779},
	langid = {en}
}

@article{VanderWeele2013,
	title = {Causal inference under multiple versions of treatment},
	author = {VanderWeele, Tyler J. and Hernan, Miguel A.},
	year = {2013},
	month = {05},
	date = {2013-05-29},
	journal = {Journal of Causal Inference},
	pages = {1--20},
	volume = {1},
	number = {1},
	doi = {10.1515/jci-2012-0002},
	url = {http://dx.doi.org/10.1515/jci-2012-0002}
}

@article{Rehkopf2016,
	title = {The Consistency Assumption for Causal Inference in Social Epidemiology: When a Rose Is Not a Rose},
	author = {Rehkopf, David H. and Glymour, M. Maria and Osypuk, Theresa L.},
	year = {2016},
	month = {02},
	date = {2016-02-16},
	journal = {Current Epidemiology Reports},
	pages = {63--71},
	volume = {3},
	number = {1},
	doi = {10.1007/s40471-016-0069-5},
	url = {http://dx.doi.org/10.1007/s40471-016-0069-5},
	langid = {en}
}

@article{Fink2022,
	title = {Mosquito Net Use in Early Childhood and Survival to Adulthood in Tanzania},
	author = {Fink, {Günther} and Mrema, Sigilbert and Abdulla, Salim and Kachur, S. Patrick and Khatib, Rashid and Lengeler, Christian and Masanja, Honorati and Okumu, Fredros and Schellenberg, Joanna},
	year = {2022},
	month = {02},
	date = {2022-02-03},
	journal = {New England Journal of Medicine},
	pages = {428--436},
	volume = {386},
	number = {5},
	doi = {10.1056/nejmoa2112524},
	url = {http://dx.doi.org/10.1056/NEJMoa2112524},
	langid = {en}
}

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Dependencies

DESCRIPTION cran
  • MatchIt * imports
  • bookdown * imports
  • broom * imports
  • ggdag * imports
  • gtsummary * imports
  • ragg * imports
  • rsample >= 0.0.5 imports
  • smd * imports
  • survey * imports
  • tidyverse * imports
  • tipr * imports
  • touringplans >= 0.0.0.9000 imports
  • grkstyle >= 0.0.3 suggests
  • styler * suggests
.github/workflows/pr-commands.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • r-lib/actions/pr-fetch v1 composite
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  • r-lib/actions/setup-r v1 composite
.github/workflows/quarto.yaml actions
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  • nwtgck/actions-netlify v1.1 composite
  • quarto-dev/quarto-actions/render v2 composite
  • quarto-dev/quarto-actions/setup v2 composite
  • r-lib/actions/setup-r v2 composite