Science Score: 65.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 5 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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✓Institutional organization owner
Organization sainsburywellcomecentre has institutional domain (www.ucl.ac.uk) -
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.4%) to scientific vocabulary
Repository
Online docs repo for Aeon.
Basic Info
- Host: GitHub
- Owner: SainsburyWellcomeCentre
- License: bsd-3-clause
- Language: Jupyter Notebook
- Default Branch: main
- Homepage: https://aeon.swc.ucl.ac.uk
- Size: 92.3 MB
Statistics
- Stars: 3
- Watchers: 8
- Forks: 2
- Open Issues: 46
- Releases: 0
Metadata Files
readme.md
aeon_docs
This repo contains the source for the Aeon online documentation.
[!CAUTION] The documentation is currently under active development and may be incomplete. Please report any issues or suggestions for improvement by opening an issue.
To contribute to the documentation, please see the Contributor Guide.
Aeon organisation overview
Aeon is a collaborative effort to perform behavioural neuroscience experiments where the behaviour and neural activity of freely moving animals engaging in a complex task are continuously recorded. This project is contributed to by researchers and support staff at UCL's SWC, Neurogears, and Datajoint. Please refer to our website for the full list of contributors.
If you are interested in joining this project, please contact the project maintainers.
Credentials
Below are the required sets of credentials for Aeon members:
- Microsoft Teams: contact Jai Bhagat, Gonçalo Lopes, or Dario Campagner
- SWC Github organization: contact SWC Helpdesk
- SWC Github
aeonproject: contact Jai Bhagat or Gonçalo Lopes - SWC HPC: contact SWC Helpdesk
aeonHPC Linux group: contact SWC Helpdesk- Datajoint database username: contact Thinh Nguyen
To be granted these credentials, please send a single email to all contact parties requesting this access.
Repositories
Aeon is organised into multiple repositories. The full list of repositories and their descriptions are available in the Repositories section of the documentation.
Project Maintainers
- Jai Bhagat (jai.bhagat.21@ucl.ac.uk)
- Gonçalo Lopes (g.lopes@neurogears.org)
- Dario Campagner (d.campagner@ucl.ac.uk)
- Chang Huan Lo (changhuan.lo@ucl.ac.uk)
Citation Policy
If you use this software, please cite it as below:
D. Campagner, J. Bhagat, G. Lopes, L. Calcaterra, A. G. Pouget, A. Almeida, T. T. Nguyen, C. H. Lo, T. Ryan, B. Cruz, F. J. Carvalho, Z. Li, A. Erskine, J. Rapela, O. Folsz, M. Marin, J. Ahn, S. Nierwetberg, S. C. Lenzi, J. D. S. Reggiani, SGEN group—SWC GCNU Experimental Neuroethology Group. Aeon: an open-source platform to study the neural basis of ethological behaviours over naturalistic timescales. Preprint at https://doi.org/10.1101/2025.07.31.664513 (2025)
Owner
- Name: SainsburyWellcomeCentre
- Login: SainsburyWellcomeCentre
- Kind: organization
- Website: http://www.ucl.ac.uk/swc
- Repositories: 21
- Profile: https://github.com/SainsburyWellcomeCentre
Citation (CITATION.cff)
cff-version: 1.0.0 message: "If you use this software, please cite it as below." authors: - family-names: "Sainsbury Wellcome Centre Foraging Behaviour Working Group" title: "Aeon: An open-source platform to study the neural basis of ethological behaviours over naturalistic timescales" doi: 10.5281/zenodo.8413142 date-released: 2023-10-05 url: https://github.com/SainsburyWellcomeCentre/aeon_docs
GitHub Events
Total
- Issues event: 90
- Watch event: 1
- Delete event: 32
- Issue comment event: 66
- Push event: 137
- Pull request review comment event: 30
- Pull request review event: 54
- Pull request event: 72
- Fork event: 1
- Create event: 38
Last Year
- Issues event: 90
- Watch event: 1
- Delete event: 32
- Issue comment event: 66
- Push event: 137
- Pull request review comment event: 30
- Pull request review event: 54
- Pull request event: 72
- Fork event: 1
- Create event: 38
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 63
- Total pull requests: 49
- Average time to close issues: about 2 months
- Average time to close pull requests: 29 days
- Total issue authors: 6
- Total pull request authors: 5
- Average comments per issue: 0.19
- Average comments per pull request: 0.61
- Merged pull requests: 33
- Bot issues: 0
- Bot pull requests: 4
Past Year
- Issues: 60
- Pull requests: 42
- Average time to close issues: about 1 month
- Average time to close pull requests: 17 days
- Issue authors: 6
- Pull request authors: 5
- Average comments per issue: 0.18
- Average comments per pull request: 0.71
- Merged pull requests: 29
- Bot issues: 0
- Bot pull requests: 4
Top Authors
Issue Authors
- lochhh (35)
- glopesdev (18)
- jkbhagatio (8)
- Dario55 (7)
- lorycalca (4)
- snierwetberg (2)
Pull Request Authors
- lochhh (44)
- dependabot[bot] (6)
- glopesdev (3)
- anayapouget (1)
- jkbhagatio (1)
- ttngu207 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 5
-
Total downloads:
- nuget 9,499 total
- pypi 16 last-month
-
Total dependent packages: 5
(may contain duplicates) -
Total dependent repositories: 0
(may contain duplicates) - Total versions: 64
- Total maintainers: 4
nuget.org: aeon.database
Provides querying and schema functionality for Project Aeon databases.
- Homepage: https://sainsburywellcomecentre.github.io/aeon_docs
- License: bsd-3-clause
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Latest release: 0.1.0
published almost 2 years ago
Rankings
Maintainers (3)
nuget.org: aeon.foraging
Provides acquisition and control modules for Project Aeon foraging experiments.
- Homepage: https://sainsburywellcomecentre.github.io/aeon_docs
- License: bsd-3-clause
-
Latest release: 0.1.2
published over 1 year ago
Rankings
Maintainers (2)
nuget.org: aeon.environment
Provides reactive modules for controlling and monitoring Project Aeon environments.
- Homepage: https://sainsburywellcomecentre.github.io/aeon_docs
- License: bsd-3-clause
-
Latest release: 0.1.0
published almost 2 years ago
Rankings
Maintainers (2)
nuget.org: aeon.acquisition
A package providing common acquisition and control functionality for all Project Aeon experiments.
- Homepage: https://sainsburywellcomecentre.github.io/aeon_docs
- License: bsd-3-clause
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Latest release: 0.6.0
published over 1 year ago
Rankings
Maintainers (3)
pypi.org: swc-aeon
A package for interfacing with acquired data from Project Aeon experiments.
- Homepage: https://sainsburywellcomecentre.github.io/aeon_docs/
- Documentation: https://sainsburywellcomecentre.github.io/aeon_docs/
- License: BSD 3-Clause License Copyright (c) 2023-2025, University College London Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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Latest release: 0.1.0
published about 1 year ago