Data

Tools

Indexes

Applications

Experiments

Open Source Science

fdp

Repository with the content of the WikiPathways FAIR Data Point.

https://github.com/wikipathways/fdp

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.9%) to scientific vocabulary

Keywords

fair-data-point fdp wikipathway
Last synced: 6 months ago · JSON representation ·

Repository

Repository with the content of the WikiPathways FAIR Data Point.

Basic Info
Statistics
  • Stars: 0
  • Watchers: 4
  • Forks: 0
  • Open Issues: 4
  • Releases: 0
Topics
fair-data-point fdp wikipathway
Created over 5 years ago · Last pushed 9 months ago
Metadata Files
Readme Citation

README.md

WikiPathways FDP

Repository with the content of the WikiPathways FAIR Data Point.

It pings the EJP-RD FAIR Data Points Index.

File generation

shell groovy update.groovy cp index.ttl index.html cp catalog/index.ttl catalog/index.html

ShEx Validation

The following commands can be used to validate the FDP against the matching shape expression:

shell groovy validate.groovy resource.shex http://fairdatapoint.org/ResourceShape \ index.html http://purl.org/fdp/fdp-o#FairDataPoint groovy validate.groovy catalog.shex http://fairdatapoint.org/CatalogShape \ index.html http://www.w3.org/ns/dcat#Catalog groovy validate.groovy catalog.shex http://fairdatapoint.org/CatalogShape \ catalog/index.html http://www.w3.org/ns/dcat#Catalog

Funding

This project has received support from EJP-RD, funded the European Union’s Horizon 2020 research and innovation programme under grant agreement N°825575.

Owner

  • Name: WikiPathways
  • Login: wikipathways
  • Kind: organization

Open source software development related to the WikiPathways project

Citation (CITATION.cff) 

cff-version: 1.2.0
message: Please cite the following works when using this software.
type: software
authors:
  - family-names: Slenter
    given-names: Denise N.
  - family-names: Kutmon
    given-names: Martina
  - family-names: Hanspers
    given-names: Kristina
  - family-names: Hanspers
    given-names: Kristina
  - family-names: Riutta
    given-names: Anders
  - family-names: Windsor
    given-names: Jacob
  - family-names: Nunes
    given-names: Nuno
  - family-names: Mélius
    given-names: Jonathan
  - family-names: Cirillo
    given-names: Elisa
  - family-names: Coort
    given-names: Susan
  - family-names: Digles
    given-names: Daniela
  - family-names: Ehrhart
    given-names: Friederike
  - family-names: Giesbertz
    given-names: Pieter
  - family-names: Kalafati
    given-names: Marianthi
  - family-names: Martens
    given-names: Marvin
  - family-names: Miller
    given-names: Ryan
  - family-names: Nishida
    given-names: Kozo
  - family-names: Rieswijk
    given-names: Linda
  - family-names: Waagmeester
    given-names: Andra
  - family-names: Eijssen
    given-names: Lars M.T.
  - family-names: Evelo
    given-names: Chris T.
  - family-names: Pico
    given-names: Alexander R.
  - family-names: Pico
    given-names: Alexander R.
  - family-names: Willighagen
    given-names: Egon L.
doi: 10.1093/NAR/GKX1064
identifiers:
  - type: doi
    value: 10.1093/NAR/GKX1064
  - type: other
    value: urn:issn:0305-1048
  - type: other
    value: pmcid:5753270
  - type: other
    value: pmid:29136241
keywords:
  - WikiPathways
  - metabolomics
  - biological pathway
  - database
title: >-
  WikiPathways: a multifaceted pathway database bridging metabolomics to other
  omics research

GitHub Events

Total
  • Push event: 5
Last Year
  • Push event: 5

Dependencies

.github/workflows/ping.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • py-actions/py-dependency-install v4 composite
.github/workflows/validate.yml actions
  • actions/checkout v3 composite
  • actions/configure-pages v3 composite
  • actions/deploy-pages v2 composite
  • actions/jekyll-build-pages v1 composite
  • actions/setup-python v4 composite
  • actions/upload-pages-artifact v1 composite
  • py-actions/py-dependency-install v4 composite
  • vemonet/jena-riot-action v3.14 composite
script/requirements.txt pypi
  • requests *