#contains citations in BibTeX format to papers used to research metagenomic analysis tools
@article{gill2006metagenomic,
  title={Metagenomic analysis of the human distal gut microbiome},
  author={Gill, Steven R and Pop, Mihai and DeBoy, Robert T and Eckburg, Paul B and Turnbaugh, Peter J and Samuel, Buck S and Gordon, Jeffrey I and Relman, David A and Fraser-Liggett, Claire M and Nelson, Karen E},
  journal={science},
  volume={312},
  number={5778},
  pages={1355--1359},
  year={2006},
  publisher={American Association for the Advancement of Science}
}

@article{ayling2020new,
  title={New approaches for metagenome assembly with short reads},
  author={Ayling, Martin and Clark, Matthew D and Leggett, Richard M},
  journal={Briefings in bioinformatics},
  volume={21},
  number={2},
  pages={584--594},
  year={2020},
  publisher={Oxford University Press}
}

@article{turnbaugh2009effect,
  title={The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice},
  author={Turnbaugh, Peter J and Ridaura, Vanessa K and Faith, Jeremiah J and Rey, Federico E and Knight, Rob and Gordon, Jeffrey I},
  journal={Science translational medicine},
  volume={1},
  number={6},
  pages={6ra14--6ra14},
  year={2009},
  publisher={American Association for the Advancement of Science}
}

@article{breitwieser2019review,
  title={A review of methods and databases for metagenomic classification and assembly},
  author={Breitwieser, Florian P and Lu, Jennifer and Salzberg, Steven L},
  journal={Briefings in bioinformatics},
  volume={20},
  number={4},
  pages={1125--1136},
  year={2019},
  publisher={Oxford University Press}
}

@article{roumpeka2017review,
  title={A review of bioinformatics tools for bio-prospecting from metagenomic sequence data},
  author={Roumpeka, Despoina D and Wallace, R John and Escalettes, Frank and Fotheringham, Ian and Watson, Mick},
  journal={Frontiers in genetics},
  volume={8},
  pages={23},
  year={2017},
  publisher={Frontiers}
}

@article{vollmers2017comparing,
  title={Comparing and evaluating metagenome assembly tools from a microbiologist’s perspective-not only size matters!},
  author={Vollmers, John and Wiegand, Sandra and Kaster, Anne-Kristin},
  journal={PloS one},
  volume={12},
  number={1},
  pages={e0169662},
  year={2017},
  publisher={Public Library of Science San Francisco, CA USA}
}

@article{koutsandreas2019anastasia,
  title={ANASTASIA: an automated metagenomic analysis pipeline for novel enzyme discovery exploiting next generation sequencing data},
  author={Koutsandreas, Theodoros and Ladoukakis, Efthymios and Pilalis, Eleftherios and Zarafeta, Dimitra and Kolisis, Fragiskos N and Skretas, Georgios and Chatziioannou, Aristotelis A},
  journal={Frontiers in Genetics},
  volume={10},
  pages={469},
  year={2019},
  publisher={Frontiers}
}

@article{kunin2008bioinformatician,
  title={A bioinformatician's guide to metagenomics},
  author={Kunin, Victor and Copeland, Alex and Lapidus, Alla and Mavromatis, Konstantinos and Hugenholtz, Philip},
  journal={Microbiology and molecular biology reviews},
  volume={72},
  number={4},
  pages={557--578},
  year={2008},
  publisher={Am Soc Microbiol}
}