eval_phenoflex
A bundle of evaluation functions I use when working with phenoflex
Science Score: 67.0%
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Repository
A bundle of evaluation functions I use when working with phenoflex
Basic Info
- Host: GitHub
- Owner: larscaspersen
- Language: R
- Default Branch: main
- Size: 1.09 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 1 year ago
· Last pushed 10 months ago
Metadata Files
Readme
Citation
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "fig/README-",
out.width = "100%"
)
```
# evalpheno 
[](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[](https://doi.org/10.5281/zenodo.15174551)
`evalpheno` is a collection of evaluation functions and wrapper functions that allow customized calibration phenology models coming from the PhenoFlex modeling framework.
`evalpheno` aims to expand the calibration of the phenology model PhenoFlex, part of the chillR package. By customizing evaluation functions or wrapper functions input parameters can be fixed or parameters can be replaxed by more narrowly defined intermediate parameters. The evaluation functions make it easier to calibrate the models with other global optimization algorithms. Also more structural changes could be made to the model, like sharing chill and heat accumulation submodel parameters across cultivars of the same species, while still having cultivar-specific chill and heat requirements and transition parameters. Or several phenological stages could be evaluated in one model, instead of having seperate models for each stage.
## Installation
You can install the development version of evalpheno like so:
```{r, eval=FALSE}
install.packages('devtools')
devtools::install_github('https://github.com/larscaspersen/eval_phenoflex')
```
##
Owner
- Name: Lars Caspersen
- Login: larscaspersen
- Kind: user
- Location: Bonn, Germany
- Company: University of Bonn
- Website: https://www.researchgate.net/profile/Lars-Caspersen
- Repositories: 13
- Profile: https://github.com/larscaspersen
PhD candidate INRES-Horticulture
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: evalpheno
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Lars
family-names: Caspersen
email: lcaspers@uni-bonn.de
affiliation: University of Bonn
orcid: 'https://orcid.org/0009-0000-3057-7327'
identifiers:
- type: doi
value: 10.5281/zenodo.15174551
repository-code: 'https://github.com/larscaspersen/eval_phenoflex'
abstract: >-
A collection of wrapper function for phenology modeling
framework PhenoFlex. Allows to customize calculation of
bloom dates, fixing or pooling model parameters. Contains
also wrapper functions that can be used to calibrate the
model with global optimization algorithms.
keywords:
- phenology
- dormancy
version: v0.0.1
GitHub Events
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Last Year
- Release event: 1
- Push event: 4
- Create event: 1
Dependencies
DESCRIPTION
cran