ceas - 1.3.0

This release contains all features described in our publication. See News. Full Changelog: https://github.com/jamespeapen/ceas/compare/1.2.1...1.3.0

- R
Published by jamespeapen about 1 year ago

ceas - 1.2.1

What's Changed

• read_data() throws an error if the "Group" column of the input data is only one word that cannot be separated with the delimiter provided by the user.

  • Linear mixed-effects models can now be used to get mean and confidence intervals for datasets with replicates. ATP production, OCR and ECAR are modelled as the response with experimental group as a fixed effect and replicate as a random effect. Mixed-effects modelling is supported by get_energetics_summary(), get_rate_summary(), bioscope_plot(), atp_plot(), and rate_plot().
  • get_energetics() now warns about possible mismatches between the replicates in the MITO and GLYCO groups instead of stopping as datasets with different replicate counts can cause a mismatch that may not be erroneous.
  • rate_plot() now has a linewidth parameter to set the width of its geom_lines
  • Separating replicates is now supported for getting get_energetics_summary(), bioscope_plot(), atp_plot() and rate_plot() with sep_reps = TRUE. This will calculate summary statistics for each replicate within a group instead of combining them. atp_plot() now uses a linerange plot instead of a crossbar plot and color to distinguish between replicates instead of experimental groups. There is no color if there are no replicates or if they are combined.
  • Preserve the replicate column when returning energetics from get_energetics()
  • read_data() returns the replicate column as a factor instead of numeric
  • Replace geom_line's deprecated size option with linewidth in rate_plot

Full Changelog: https://github.com/jamespeapen/ceas/compare/1.0.0...1.2.1

- R
Published by jamespeapen about 1 year ago

ceas - 1.0.0

What's Changed

CRAN release 1.0.0

• fix(energetics): fix the coupledmitoresp calculation in https://github.com/jamespeapen/ceas/pull/5
• Warn if not background normalized by in https://github.com/jamespeapen/ceas/pull/8
• Docs update in https://github.com/jamespeapen/ceas/pull/9

- R
Published by jamespeapen almost 2 years ago

ceas - 0.1.0

Manuscript submission

• Add vignettes
• Fix documentation label in rate_plot
• Add support for custom data formats
• Code refactored

The attached tarball was build using R 4.3.2 (2023-10-31) on Ubuntu 20.04 LTS with the nix package manager. It is not guaranteed to work on other systems - use the instructions in the project README.md to install the package.

- R
Published by jamespeapen about 2 years ago

ceas - CEAS-0.0.9-beta

Beta-testing release of CEAS

- R
Published by jamespeapen over 2 years ago