Data

Tools

Indexes

Applications

Experiments

Open Source Science

Recent Releases of BlueCelluLab

BlueCelluLab - 2.6.36

What's Changed

  • CI(dependabot): Bump anothrNick/github-tag-action from 1.70.0 to 1.71.0 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/212

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.35...2.6.36

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.35

What's Changed

  • allow user to use custom function for simulation callback by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/211

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.34...2.6.35

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.34

What's Changed

  • Replace memory addresses with UUIDs to enhance the uniqueness of template_name by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/210

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.33...2.6.34

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.33

What's Changed

  • Add JOSS citation by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/208

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.32...2.6.33

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.32

What's Changed

  • minor improvement to sonata-network example by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/205

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.31...2.6.32

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.31

What's Changed

  • Example 7 proposition by @ejayromero in https://github.com/BlueBrain/BlueCelluLab/pull/194

New Contributors

  • @ejayromero made their first contribution in https://github.com/BlueBrain/BlueCelluLab/pull/194

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.30...2.6.31

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.30

What's Changed

  • Update copyright year by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/204

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.29...2.6.30

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.29

What's Changed

  • Update readme citation and add CITATION.cff file by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/203

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.28...2.6.29

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.28

What's Changed

  • Add authors to zenodo file by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/202

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.26...2.6.28

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.27

Scientific Software - Peer-reviewed - Python
Published by AurelienJaquier over 1 year ago

BlueCelluLab - 2.6.26

What's Changed

  • Fix: Add missing 'units' attribute to timestamp in test HDF5 file by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/200

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.25...2.6.26

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.25

What's Changed

  • add bb5-tests by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/197

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.24...2.6.25

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.24

What's Changed

  • CI(dependabot): Bump anothrNick/github-tag-action from 1.69.0 to 1.70.0 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/198

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.23...2.6.24

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.23

What's Changed

  • remove double CircuitSimulation by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/196

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.22...2.6.23

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.22

What's Changed

  • replace ampcv with relativeskew by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/195

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.21...2.6.22

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.21

What's Changed

  • add contributing guidelines by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/190

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.20...2.6.21

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.20

What's Changed

  • Correct 'projections' for getsyndescriptions by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/187

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.19...2.6.20

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.19

What's Changed

  • Add holding current to applymultiplestimuli by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/193

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.18...2.6.19

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.18

What's Changed

  • Feat: support custom node sets defined in simulation config by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/192

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.17...2.6.18

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

BlueCelluLab - 2.6.17

What's Changed

  • add cvode argument to applymultiplestimuli by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/191

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.16...2.6.17

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.16

What's Changed

  • Refactor: remove deprecated source population field in SynapseReplay by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/185

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.15...2.6.16

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.15

What's Changed

  • Fix: handle edge case in synapse location calculation with syn_description by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/184

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.14...2.6.15

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.14

What's Changed

  • amplitude based stimuli in applymultiplestimuli by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/182

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.13...2.6.14

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.13

What's Changed

  • further restrict IsolatedProcess by setting multiprocessing start method by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/181

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.12...2.6.13

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.12

What's Changed

  • add cheops to list of stim docs by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/179

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.11...2.6.12

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.11

What's Changed

  • warning to log in serialized_sections #176 by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/178

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.10...2.6.11

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.10

What's Changed

  • relax h5py to >=3.8.0, to make it easier to package in spack by @mgeplf in https://github.com/BlueBrain/BlueCelluLab/pull/177

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.9...2.6.10

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.9

What's Changed

  • Update singlecell and sequence-stimuli example by @darshanmandge in https://github.com/BlueBrain/BlueCelluLab/pull/173

New Contributors

  • @darshanmandge made their first contribution in https://github.com/BlueBrain/BlueCelluLab/pull/173

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.8...2.6.9

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.8

What's Changed

  • remove examples from package distribution by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/175

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.7...2.6.8

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.7

What's Changed

  • CI(dependabot): Bump anothrNick/github-tag-action from 1.67.0 to 1.69.0 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/174

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.6...2.6.7

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.6

What's Changed

  • add cheops stimuli to StimulusFactory vsc[#minor] by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/172

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.5...2.6.6

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.5

What's Changed

  • SONATA update: expect synapse_replay files as h5 by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/171

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.4...2.6.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.4

What's Changed

  • CI(dependabot): Bump softprops/action-gh-release from 1 to 2 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/155

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.3...2.6.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.3

What's Changed

  • update plot aesthetics in example notebooks by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/170

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.2...2.6.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.2

What's Changed

  • Fix accessing afferentsectionpos of synapse description by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/169

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.1...2.6.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.1

What's Changed

  • fetch afferentsectionpos from sonata by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/168

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.6.0...2.6.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.6.0

What's Changed

  • Update stimulus factory API [vcs: #minor] by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/164

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.11...2.6.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.11

What's Changed

  • Controls the passing of NEURON global params to processes by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/165

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.10...2.5.11

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.10

What's Changed

  • account for unknown section types by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/167

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.9...2.5.10

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.9

What's Changed

  • fix spike detection in tools by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/163

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.8...2.5.9

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.8

What's Changed

  • Improve threshold search by @AurelienJaquier in https://github.com/BlueBrain/BlueCelluLab/pull/161

New Contributors

  • @AurelienJaquier made their first contribution in https://github.com/BlueBrain/BlueCelluLab/pull/161

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.7...2.5.8

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.7

What's Changed

  • FIX: bug in setting NeuronGlobals by CircuitSim::run by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/160

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.6...2.5.7

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.6

What's Changed

  • update pyproject.toml simplify setuptools package find by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/159

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.5...2.5.6

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.5

What's Changed

  • deprecate SSim use CircuitSimulation by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/158

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.4...2.5.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.4

What's Changed

  • rm debugtest mark, tests are equally debuggable by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/157

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.3...2.5.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.3

What's Changed

  • Migrate from setup.py to pyproject.toml by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/156

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.5.0...2.5.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

BlueCelluLab - 2.5.0

What's Changed

  • decouple setting global neuron attributes from sim run [vcs: #minor] by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/154

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.4.1...2.5.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.4.1

What's Changed

  • injecting a sequence of stimuli on the same cell in isolation by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/151

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.4.0...2.4.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.4.0

What's Changed

  • Refactor functions that include running isolated simulations [vcs: #minor] by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/149

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.3.7...2.4.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.3.7

What's Changed

  • TStim implementation in addstep and addramp by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/147

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.3.6...2.3.7

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.3.6

What's Changed

  • Use CaptureOutput to forward hoc's stdout to logger.debug by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/148

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.3.5...2.3.6

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.3.5

What's Changed

  • migrate pkg_resources -> importlib.resources by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/146

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.3.4...2.3.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.3.4

What's Changed

  • Performance: enable tox-uv in CI workflows by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/145

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.3.3...2.3.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.3.3

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.3.2...2.3.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.3.2

What's Changed

  • CI: pass CODECOV token in release->test workflow call by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/141
  • Enable injecting Python generated Stimuli [vcs: #minor] by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/142

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.3.1...2.3.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.3.1

What's Changed

  • Simplify psection representation in Cell by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/137

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.7...2.3.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.7

What's Changed

  • Refactor: separate bluepy and sonata access objects into different modules by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/135

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.6...2.2.7

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.6

What's Changed

  • set logger level of importer module to debug by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/139

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.5...2.2.6

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.5

What's Changed

  • fix #117 somascaler/AISscaler by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/134

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.4...2.2.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.4

What's Changed

  • apply small refactorings by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/132

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.3...2.2.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.3

What's Changed

  • avoid accessing private hoc attribute in core.py by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/130

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.2...2.2.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.2

What's Changed

  • libsonata has in the process of refactoring its module by @mgeplf in https://github.com/BlueBrain/BlueCelluLab/pull/123

New Contributors

  • @mgeplf made their first contribution in https://github.com/BlueBrain/BlueCelluLab/pull/123

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.1...2.2.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.1

What's Changed

  • CI(dependabot): Bump codecov/codecov-action from 3 to 4 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/125

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.2.0...2.2.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.2.0

What's Changed

  • Add default value for segx param, improve docs vcs: #minor by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/127

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.1.0...2.2.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.1.0

What's Changed

  • Allow API functions to be used without loading hoc/mod #minor by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/124

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.0.3...2.1.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.0.3

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.0.2...2.0.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.0.2

What's Changed

  • replace bluecellulab.neuron -> neuron by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/122

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.0.1...2.0.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.0.1

What's Changed

  • readme running tests by @edasubert in https://github.com/BlueBrain/BlueCelluLab/pull/121

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/2.0.0...2.0.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 2.0.0

What's Changed

  • bluepysnap 3.0.0 #major by @edasubert in https://github.com/BlueBrain/BlueCelluLab/pull/119

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.8.6...2.0.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 1.8.6

What's Changed

  • pytest-nose-test-deprecation by @edasubert in https://github.com/BlueBrain/BlueCelluLab/pull/120

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.8.5...1.8.6

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

BlueCelluLab - 1.8.5

What's Changed

  • CI(dependabot): Bump actions/setup-python from 4 to 5 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/118

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.8.4...1.8.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.8.4

What's Changed

  • prevent KeyError getallstimuli_entries by @edasubert in https://github.com/BlueBrain/BlueCelluLab/pull/115

New Contributors

  • @edasubert made their first contribution in https://github.com/BlueBrain/BlueCelluLab/pull/115

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.8.3...1.8.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.8.3

What's Changed

  • avoid adding extra label and population encoding to graph by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/114

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.8.2...1.8.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.8.2

What's Changed

  • Network plot by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/104

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.8.1...1.8.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.8.1

What's Changed

  • use typing_extensions.deprecated decorator by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/113

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.8.0...1.8.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.8.0

What's Changed

  • Update dependencies #minor by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/112

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.7.6...1.8.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.7.6

What's Changed

  • Fix: Remove v6 adapted and fix scaler issues by @arnaudon in https://github.com/BlueBrain/BlueCelluLab/pull/109

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.7.5...1.7.6

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.7.5

What's Changed

  • snap usage: stop parsing the population name by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/111

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.7.4...1.7.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.7.4

What's Changed

  • use logging in importer and serialized sections #107 by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/108

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.7.3...1.7.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.7.3

What's Changed

  • access public hoc templates with getCell or CellRef by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/106

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.7.2...1.7.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.7.2

What's Changed

  • Updating the terminology in api and docstring of Cell by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/91

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.7.1...1.7.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.7.1

What's Changed

  • addreplayhypamp to raise exception when hypamp not set by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/105

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.7.0...1.7.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.7.0

What's Changed

  • fixing bug in determining synapse type in multinode #99 #minor by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/101

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.6.5...1.7.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.6.5

What's Changed

  • CI(dependabot): Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/102
  • CI(dependabot): Bump anothrNick/github-tag-action from 1.64.0 to 1.67.0 by @dependabot in https://github.com/BlueBrain/BlueCelluLab/pull/103

New Contributors

  • @dependabot made their first contribution in https://github.com/BlueBrain/BlueCelluLab/pull/102

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.6.4...1.6.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.6.4

What's Changed

  • Create dependabot.yml by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/100

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.6.3...1.6.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.6.3

What's Changed

  • fix tutorial link in docs by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/98

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.6.2...1.6.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.6.2

What's Changed

  • Feat: Allow to load module via .so file by @arnaudon in https://github.com/BlueBrain/BlueCelluLab/pull/96

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.6.1...1.6.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.6.1

What's Changed

  • Update banner link for PyPI compatibility by @ilkilic in https://github.com/BlueBrain/BlueCelluLab/pull/95

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.6.0...1.6.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.6.0

What's Changed

  • Refactor: simplify the creation of Synapse objects #minor by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/92

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.5.3...1.6.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.5.3

What's Changed

  • DOCS: add page on compiling mechanisms by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/93

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.5.2...1.5.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.5.2

What's Changed

  • consistent arg names&types in replay minis&synapses by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/90

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.5.1...1.5.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.5.1

What's Changed

  • remove RNGSettings:basenoiseseed by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/86

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.5.0...1.5.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.5.0

What's Changed

  • Fix multi-edge synapses with different synapse types affecting same cell #minor by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/85

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.4.1...1.5.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.4.1

What's Changed

  • Update mechanisms loading using NEURON API by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/83

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.3.16...1.4.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.3.16

What's Changed

  • remove cell::core::initialize_synapses, it's not used by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/82

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.3.15...1.3.16

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.3.15

What's Changed

  • don't enforce having caoCRGluSynapse when extracellular_calcium is set by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/81

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.3.14...1.3.15

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.3.14

What's Changed

  • turn warning into log when alternate_morphologies is not present by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/78

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.3.13...1.3.14

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.3.13

What's Changed

  • Update tools module to support every cell template supported in Cell module by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/74

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.3.12...1.3.13

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.3.12

What's Changed

  • update epsp notebook, improve voltage base detection by @anilbey in https://github.com/BlueBrain/BlueCelluLab/pull/71

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.3.11...1.3.12

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

BlueCelluLab - 1.3.11

What's Changed

  • Feat: Update to latest adapt code by @arnaudon in https://github.com/BlueBrain/BlueCelluLab/pull/70

New Contributors

  • @arnaudon made their first contribution in https://github.com/BlueBrain/BlueCelluLab/pull/70

Full Changelog: https://github.com/BlueBrain/BlueCelluLab/compare/1.3.10...1.3.11

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago