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Recent Releases of mne-connectivity

mne-connectivity - v0.7

What's Changed

  • [v0.6 dev] New version by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/122
  • MAINT: Use git by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/130
  • [MAINT] Add docstrings to spectral time methods by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/128
  • [ENH] Fix doc according to ruuskas comment for mne-python like docstring by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/131
  • [DOC] Example comparing spectral connectivity computed over time or over trials by @Avoide in https://github.com/mne-tools/mne-connectivity/pull/129
  • [ENH] Added n_con arg to function call by @Avoide in https://github.com/mne-tools/mne-connectivity/pull/133
  • [DOC] Fixes #134. Indicate how to load connectivity data from disk by @moritz-gerster in https://github.com/mne-tools/mne-connectivity/pull/135
  • [CI] Check reqs by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/139
  • Upgrade to python 3.8 min by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/140
  • Expose colormap in plotsensorsconnectivity by @drammock in https://github.com/mne-tools/mne-connectivity/pull/141
  • [ENH, WIP] Add multivariate connectivity methods by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/138
  • [MRG] Bump website theme by @drammock in https://github.com/mne-tools/mne-connectivity/pull/144
  • MAINT: Use explicitly public APIs by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/145
  • [MAINT] Adding citation workflow by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/147
  • MAINT: Update CIs by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/154
  • [ENH] Add support for ragged connections with multivariate methods with padding by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/142
  • [MAINT] Fix failing unit tests & update CI packages by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/157
  • [MAINT] Refactor bivariate and multivariate methods into separate files by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/156
  • [BUG] Inconsistent lengths of indices and rank does not raise an error by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/158
  • [MAINT] Replace setup.py with pyproject.toml by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/160
  • [MAINT] Run black, isort, ruff, and other auto-linters on entire package by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/159
  • [CI] Fix azure by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/161
  • [RELEASE] V0.6 by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/162
  • [CI] Fix CIs by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/164
  • MAINT: Deploy maint/* branch by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/166
  • type-check data input to spectralconnectivitytime by @drammock in https://github.com/mne-tools/mne-connectivity/pull/167
  • Fix failing unit tests by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/172
  • [DOC] Add methods list to epochs function and fix formatting of list in time function by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/171
  • [BUG] Fix memory error spectralconnectivitytime by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/175
  • [BUG] njobs=-1 not working in spectralconnectivity_epochs by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/177
  • [ENH] Add connectivity simulation function by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/173
  • [ENH] Add support for multivariate coherency method (canonical coherence) by @orabe in https://github.com/mne-tools/mne-connectivity/pull/163
  • avoid FutureWarning from zero_mean default change by @drammock in https://github.com/mne-tools/mne-connectivity/pull/179
  • [DOC] Update install.rst to reflect pyproject.toml by @JonathanShor in https://github.com/mne-tools/mne-connectivity/pull/180
  • [MAINT] Fix codespell error by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/186
  • MAINT: Test on macOS arm64 by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/187
  • [MAINT] Add logic for handling AverageTFRArray in old MNE versions by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/185
  • [ENH] Reduce compute time for multivariate coherency methods by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/184
  • [MAINT] Retry improve clarity, thumbnails, and fix mistakes in multivariate examples by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/196
  • [RELEASE] V0.7 by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/195
  • [MAINT] Add release workflow by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/198

New Contributors

  • @Avoide made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/129
  • @moritz-gerster made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/135
  • @tsbinns made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/138
  • @orabe made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/163
  • @JonathanShor made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/180
  • @dependabot made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/189
  • @pre-commit-ci made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/191

Full Changelog: https://github.com/mne-tools/mne-connectivity/compare/v0.5...v0.7

- Python
Published by larsoner almost 2 years ago

mne-connectivity - v0.6

What's Changed

  • [v0.6 dev] New version by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/122
  • MAINT: Use git by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/130
  • [MAINT] Add docstrings to spectral time methods by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/128
  • [ENH] Fix doc according to ruuskas comment for mne-python like docstring by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/131
  • [DOC] Example comparing spectral connectivity computed over time or over trials by @Avoide in https://github.com/mne-tools/mne-connectivity/pull/129
  • [ENH] Added n_con arg to function call by @Avoide in https://github.com/mne-tools/mne-connectivity/pull/133
  • [DOC] Fixes #134. Indicate how to load connectivity data from disk by @moritz-gerster in https://github.com/mne-tools/mne-connectivity/pull/135
  • [CI] Check reqs by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/139
  • Upgrade to python 3.8 min by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/140
  • Expose colormap in plotsensorsconnectivity by @drammock in https://github.com/mne-tools/mne-connectivity/pull/141
  • [ENH, WIP] Add multivariate connectivity methods by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/138
  • [MRG] Bump website theme by @drammock in https://github.com/mne-tools/mne-connectivity/pull/144
  • MAINT: Use explicitly public APIs by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/145
  • [MAINT] Adding citation workflow by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/147
  • MAINT: Update CIs by @larsoner in https://github.com/mne-tools/mne-connectivity/pull/154
  • [ENH] Add support for ragged connections with multivariate methods with padding by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/142
  • [MAINT] Fix failing unit tests & update CI packages by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/157
  • [MAINT] Refactor bivariate and multivariate methods into separate files by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/156
  • [BUG] Inconsistent lengths of indices and rank does not raise an error by @tsbinns in https://github.com/mne-tools/mne-connectivity/pull/158
  • [MAINT] Replace setup.py with pyproject.toml by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/160
  • [MAINT] Run black, isort, ruff, and other auto-linters on entire package by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/159
  • [CI] Fix azure by @adam2392 in https://github.com/mne-tools/mne-connectivity/pull/161

New Contributors

  • @Avoide made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/129
  • @moritz-gerster made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/135
  • @tsbinns made their first contribution in https://github.com/mne-tools/mne-connectivity/pull/138

Full Changelog: https://github.com/mne-tools/mne-connectivity/compare/v0.5...v0.6

- Python
Published by adam2392 over 2 years ago

mne-connectivity - v0.5

This version has several improvements in the spectral connectivity analysis and some bug fixes. Functionality now requires mne>=1.3 for MNE-Python as a minimum version requirement.

This version has major changes in :func:mne_connectivity.spectral_connectivity_time. Several bugs are fixed, and the function now computes static connectivity over time, as opposed to static connectivity over trials computed by :func:mne_connectivity.spectral_connectivity_epochs.

- Python
Published by adam2392 over 3 years ago

mne-connectivity - v0.4

There are a few enhancements. Notably, the dPLI method was added to :func:mne_connectivity.spectral_connectivity_epochs. There are some bug fixes to the underlying API to make compatible with MNE-Python v1.2+.

- Python
Published by adam2392 over 3 years ago

mne-connectivity - Release v0.3

This version has bug fixes minor improvements in certain functions. A big change is the renaming of functions spectral_connectivity to spectral_connectivity_epochs, which makes it explicit that the function operates over Epochs, rather then time. Importantly, we also provide a conda installation now.

- Python
Published by adam2392 about 4 years ago

mne-connectivity - Release v0.2

In this version, we return the relevant Connectivity class from each of the connectivity estimation functions. These internally use xarray to represent the connectivity data. One can easily get the v0.1 numpy array by doing conn.get_data(), which will get exactly the same output as one got in v0.1 running any of the connectivity functions.

- Python
Published by adam2392 over 4 years ago

mne-connectivity - v0.1.0

v0.1.0

- Python
Published by adam2392 almost 5 years ago