bioimageoperation
Image processing tool focusing on biological applications
Science Score: 31.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.4%) to scientific vocabulary
Keywords
Repository
Image processing tool focusing on biological applications
Basic Info
- Host: GitHub
- Owner: folterj
- License: gpl-3.0
- Language: C++
- Default Branch: master
- Homepage: http://joostdefolter.info
- Size: 3.29 MB
Statistics
- Stars: 13
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 2
Topics
Metadata Files
README.md
BioImageOperation
Bio Image Operation or 'BIO', is a next generation Image processing tool focusing on biological applications, balancing ease of use with desired flexibility required for research.
This tool has been developed in collaboration with biologists, using extensive captured images.
The solution balancing both the need for research purposes and flexibility required for this, and desired ease of use is realised in a script based user interface.
The tool uses the widely used OpenCV for many of it's image operations, with an efficient tracking algorithm allowing real time processing.
This is a CMake / Qt / Microsoft Visual Studio 2019 project
The project can be opened as a CMake or Qt project by opening the BioImageOperation root folder, or as a Visual Studio project opening the solution file.
Requirements
- CMake (cmake.org) / Visual Studio (visualstudio.microsoft.com)
- Qt 5 (qt.io)
- OpenCV 4.4.0 (opencv.org)
- Openh264 1.8.0 library (github.com/cisco/openh264)
Windows project setup / installation
- OpenCV
- Qt 5 (with MSVC option)
- Wix 3
- Visual Studio (with C++, Linux C++, Windows SDK, CMake Tools)
- Visual Studio Extension: Qt Tools
- Visual Studio: Qt options: Set to Qt MSVC sub-folder
- Visual Studio Extension: Wix Toolkit
Citing
Cano-Ferrer X, Roberts R, French A, de Folter J, Gong H, Nightingale L, Strange A, Imbert A, Prieto-Godino L (2023) OptoPi: An open source flexible platform for the analysis of small animal behaviour HardwareX 15:E00443. DOI: 10.1016/j.ohx.2023.e00443
Links
For Windows binaries and more/project info see: joostdefolter.info
For support and discussion, please use the Image.sc forum and post to the forum with the tag 'BioImageOperation'.
Owner
- Name: Joost de Folter
- Login: folterj
- Kind: user
- Location: Netherlands
- Website: joostdefolter.info
- Repositories: 11
- Profile: https://github.com/folterj
Active in various research projects
Citation (CITATION.md)
```
@misc{Cano-Ferrer_Roberts_French_de Folter_Gong_Nightingale_Strange_Imbert_Prieto-Godino_2023,
title={OptoPi: An open source flexible platform for the analysis of small animal behaviour},
author={Cano-Ferrer, Xavier and Roberts, Ruairí J.V. and French, Alice S. and de Folter, Joost and Gong, Hui and Nightingale, Luke and Strange, Amy and Imbert, Albane and Prieto-Godino, Lucia L.},
url={http://dx.doi.org/10.1016/j.ohx.2023.e00443},
DOI={10.1016/j.ohx.2023.e00443},
year={2023},
month={Sep},
publisher={Elsevier BV},
journal={HardwareX},
volume={15},
pages={e00443},
language={en}
}
```
GitHub Events
Total
- Release event: 1
- Create event: 1
Last Year
- Release event: 1
- Create event: 1