cellprofiler_niior_plugin
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.4%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: d-e-shumeyko
- License: other
- Language: Python
- Default Branch: main
- Size: 79.2 MB
Statistics
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. More information can be found in the CellProfiler Wiki.
What version of CellProfiler should I use?
We recommend the stable release of CellProfiler.
You can download a stable release for macOS and Windows from the CellProfiler website.
If youre contributing or planning to contribute to CellProfiler, you should compile CellProfiler from source. Instructions for compiling CellProfiler on Linux, macOS and Windows are available from CellProfilers GitHub wiki.
If youre the maintainer of a third-party CellProfiler module, you should use the nightly release of CellProfiler. You can download a nightly release for macOS and Windows from the CellProfiler website. Let us know if weve inadvertently broken your module by submitting a GitHub issue.
If youre an enthusiastic CellProfiler user, you should try the beta release of CellProfiler. You can download a beta release for macOS and Windows from the CellProfiler website. Let us know if you encounter a bug by submitting a GitHub issue.
Owner
- Login: d-e-shumeyko
- Kind: user
- Repositories: 1
- Profile: https://github.com/d-e-shumeyko
GitHub Events
Total
- Push event: 5
- Create event: 1
Last Year
- Push event: 5
- Create event: 1
Dependencies
- pytorch/pytorch 1.13.0-cuda11.6-cudnn8-runtime build
- amd64/ubuntu 20.04 build
- Jinja2 >=3.1.2
- Pillow >=10.0.0
- boto3 >=1.28.41
- cellprofiler-core >=5.dev
- cellprofiler-library >=5.dev
- centrosome >=1.3.0
- docutils ==0.15.2
- h5py >=3.7.0
- imageio >=2.31.3
- joblib >=1.3.2
- mahotas >=1.4.13
- matplotlib >=3.1.3,<4
- mysqlclient >=2.2.3
- numpy >=1.24.4,<2
- packaging >=20.0
- pyzmq >=22.3.0
- rapidfuzz >=3.0.0
- requests >=2.31.0
- scikit-image >=0.20.0
- scikit-learn >=1.3.0
- scipy >=1.9.1,<1.11
- scyjava >=1.9.1
- sentry-sdk ~=2.8.0
- six >=1.16.0
- tifffile >=2022.4.8
- wxPython >=4.2.0
- boto3 >=1.12.28
- cellprofiler-library >=5.dev
- centrosome >=1.3.0
- docutils >=0.15.2
- fsspec >=2021.11.0
- future >=0.18.2
- google-cloud-storage ~=2.10.0
- h5py >=3.7.0
- lxml >=4.6.4
- matplotlib >=3.1.3,<4
- numpy >=1.24.4,<2
- packaging >=20.0
- psutil >=5.9.5
- pyzmq >=22.3.0
- scikit-image >=0.20.0
- scipy >=1.9.1,<1.11
- scyjava >=1.9.1
- zarr >=2.16.1
- centrosome >=1.3.0
- mahotas >=1.4.13
- matplotlib >=3.1.3,<4
- numpy >=1.26.4,<2
- packaging >=20.0
- scikit-image >=0.20.0
- scipy >=1.9.1,<1.11
- boto3
- docutils
- h5py
- imageio
- joblib
- mahotas
- matplotlib
- mysqlclient
- numpy
- psutil
- pyzmq
- scikit-image
- scipy
- scyjava
- boto3
- docutils
- future
- h5py
- matplotlib
- numpy
- psutil
- pyzmq
- scikit-image
- scipy
- scyjava
- mahotas
- matplotlib
- numpy
- scikit-image
- scipy